mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4062809 | 195 (1.240) | 3 (0.020) | 3/412 | NT | 1.5% | coding (564/1266 nt) | yihN | MFS transporter family protein |
| ? | NC_000913 | = 4062815 | 200 (1.330) | coding (570/1266 nt) | yihN | MFS transporter family protein | |||||
| * | ? | NC_000913 | = 3982338 | 145 (0.920) | 3 (0.020) | 3/416 | NT | 2.0% | intergenic (+67/‑36) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| ? | NC_000913 | = 3982352 | 160 (1.050) | intergenic (+81/‑22) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg | |||||
| * | ? | NC_000913 | 3736307 = | 213 (1.360) | 4 (0.030) | 4/402 | NT | 2.1% | noncoding (155/171 nt) | REP268 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element, contains 4 REP sequences |
| ? | NC_000913 | 3736339 = | 165 (1.120) | intergenic (+183/+13) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | NC_000913 | 3100616 = | 211 (1.340) | 3 (0.020) | 3/418 | NT | 1.4% | coding (111/1047 nt) | ansB | periplasmic L‑asparaginase 2 |
| ? | NC_000913 | 3100637 = | 207 (1.360) | coding (90/1047 nt) | ansB | periplasmic L‑asparaginase 2 | |||||
| * | ? | NC_000913 | = 2766335 | 206 (1.310) | 3 (0.020) | 3/416 | NT | 1.4% | coding (420/1074 nt) | rnlA | CP4‑57 prophage, RNase LS |
| ? | NC_000913 | = 2766339 | 209 (1.370) | coding (424/1074 nt) | rnlA | CP4‑57 prophage, RNase LS | |||||
| * | ? | NC_000913 | 2713817 = | 171 (1.090) | 3 (0.020) | 3/408 | NT | 1.9% | coding (924/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | 2713918 = | 143 (0.960) | coding (1025/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2240539 | 150 (0.950) | 3 (0.020) | 3/426 | NT | 2.0% | intergenic (‑193/+87) | mglB/galS | methyl‑galactoside transporter subunit/galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor, mgl operon transcriptional repressor, autorepressor |
| ? | NC_000913 | = 2240544 | 147 (0.940) | intergenic (‑198/+82) | mglB/galS | methyl‑galactoside transporter subunit/galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor, mgl operon transcriptional repressor, autorepressor | |||||
| * | ? | NC_000913 | 1722616 = | 153 (0.970) | 3 (0.020) | 3/408 | NT | 2.0% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 153 (1.030) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | NC_000913 | = 1604992 | 163 (1.040) | 3 (0.020) | 3/416 | NT | 1.8% | coding (946/993 nt) | lsrD | autoinducer 2 import system permease protein |
| ? | NC_000913 | = 1605005 | 167 (1.100) | coding (959/993 nt) | lsrD | autoinducer 2 import system permease protein | |||||
| * | ? | NC_000913 | = 1553950 | 161 (1.020) | 3 (0.020) | 3/412 | NT | 1.9% | intergenic (‑112/+22) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring, malic enzyme |
| ? | NC_000913 | = 1553956 | 154 (1.020) | intergenic (‑118/+16) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring, malic enzyme | |||||