mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2731577 | 59 (1.320) | 5 (0.120) | 5/262 | 5.2 | 8.3% | intergenic (‑422/+21) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | NC_000913 | = 2731581 | 56 (1.360) | intergenic (‑426/+17) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone | |||||
| * | ? | NC_000913 | 3423821 = | NA (NA) | 6 (0.140) | 4/272 | 6.0 | 11.3% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946687 | 49 (1.100) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 2726198 = | NA (NA) | 6 (0.140) | 4/272 | 6.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 33 (0.740) | 6 (0.140) | 4/272 | 6.0 | 16.0% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4027325 = | NA (NA) | 19 (0.470) | 3/260 | 6.3 | 27.9% | noncoding (5/281 nt) | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences |
| ? | NC_000913 | = 4027520 | 49 (1.200) | noncoding (200/281 nt) | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | |||||
| * | ? | NC_000913 | 1465092 = | 46 (1.030) | 3 (0.070) | 3/262 | 6.4 | 7.1% | intergenic (+31/+73) | paaY/ynbG | thioesterase required for phenylacetic acid degradation, trimeric, phenylacetate regulatory and detoxification protein, hexapeptide repeat protein/uncharacterized protein |
| ? | NC_000913 | 1465125 = | 36 (0.870) | intergenic (+64/+40) | paaY/ynbG | thioesterase required for phenylacetic acid degradation, trimeric, phenylacetate regulatory and detoxification protein, hexapeptide repeat protein/uncharacterized protein | |||||
| * | ? | NC_000913 | = 4537668 | 44 (0.990) | 3 (0.070) | 3/270 | 6.5 | 6.8% | coding (1099/1107 nt) | nanM | N‑acetylneuraminic acid mutarotase |
| ? | NC_000913 | = 4537698 | 41 (0.970) | coding (1069/1107 nt) | nanM | N‑acetylneuraminic acid mutarotase | |||||
| * | ? | NC_000913 | = 1954508 | NA (NA) | 3 (0.070) | 3/270 | 6.5 | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 1954519 | NA (NA) | noncoding (91/98 nt) | RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 641354 | 53 (1.190) | 3 (0.070) | 3/270 | 6.5 | 6.0% | intergenic (+36/+85) | ahpF/uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| ? | NC_000913 | = 641366 | 43 (1.010) | intergenic (+48/+73) | ahpF/uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 3 (0.070) | 3/266 | 6.5 | NA | coding (498/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274663 = | NA (NA) | coding (455/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||