mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171606 | 33 (0.600) | 8 (0.150) | 7/272 | 4.9 | 20.2% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213021 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3946687 | 70 (1.280) | 8 (0.150) | 7/272 | 4.9 | 10.7% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4171600 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 2726198 = | NA (NA) | 8 (0.150) | 7/272 | 4.9 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 37 (0.670) | 8 (0.150) | 7/272 | 4.9 | 18.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4094337 = | NA (NA) | 23 (0.500) +23 bp |
4/238 | 5.7 | NA | noncoding (23/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences |
| ? | NC_000913 | = 4094681 | NA (NA) | noncoding (367/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4080019 = | NA (NA) | 5 (0.100) | 5/270 | 5.8 | NA | noncoding (1/98 nt) | REP297 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 4080049 = | NA (NA) | noncoding (31/98 nt) | REP297 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2349899 = | 45 (0.820) | 4 (0.080) | 4/264 | 6.2 | 8.6% | intergenic (+8/+34) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase |
| ? | NC_000913 | 2349925 = | 43 (0.840) | intergenic (+34/+8) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase | |||||
| * | ? | NC_000913 | = 3961341 | 75 (1.370) | 4 (0.080) | 4/270 | 6.3 | 5.3% | coding (666/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| ? | NC_000913 | = 3961349 | 73 (1.400) | coding (674/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase | |||||
| * | ? | NC_000913 | = 4171760 | 64 (1.170) | 12 (0.220) +TAG |
4/278 | 6.4 | 16.1% | intergenic (+5/‑296) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213197 | 64 (1.170) | intergenic (+39/‑36) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 3361047 = | 63 (1.150) | 3 (0.060) | 3/264 | 6.7 | 4.9% | intergenic (+433/‑127) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| ? | NC_000913 | 3361099 = | 58 (1.140) | intergenic (+485/‑75) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein | |||||