mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 72 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 382211 | NA (NA) | 10 (0.170) | 8/272 | 6.3 | NA | coding (538/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913 | = 382218 | NA (NA) | coding (545/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 3423374 = | 68 (1.120) | 8 (0.130) | 7/278 | 6.9 | 10.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423663 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 7 (0.120) | 5/264 | 7.7 | NA | coding (498/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274663 = | NA (NA) | coding (455/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 3911814 | 144 (2.370) | 7 (0.120) | 5/270 | 7.8 | 5.0% | intergenic (‑290/+24) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| ? | NC_000913 | = 3911824 | 129 (2.220) | intergenic (‑300/+14) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase | |||||
| * | ? | NC_000913 | 3892357 = | 117 (1.930) | 5 (0.090) | 5/270 | 7.8 | 4.4% | coding (744/1176 nt) | mdtL | multidrug efflux system protein |
| ? | NC_000913 | 3892391 = | 106 (1.830) | coding (778/1176 nt) | mdtL | multidrug efflux system protein | |||||
| * | ? | NC_000913 | 2727889 = | NA (NA) | 6 (0.100) | 5/270 | 7.8 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227052 | 31 (0.510) | 6 (0.100) | 5/270 | 7.8 | 16.8% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 191713 = | 69 (1.140) | 5 (0.090) | 5/268 | 7.8 | 7.1% | intergenic (+5/‑142) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| ? | NC_000913 | 191747 = | 65 (1.130) | intergenic (+39/‑108) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase | |||||
| * | ? | NC_000913 | 3679526 = | 46 (0.760) | 5 (0.080) | 5/274 | 7.9 | 9.9% | coding (109/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| ? | NC_000913 | 3679544 = | 46 (0.780) | coding (127/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase | |||||
| * | ? | NC_000913 | 2817753 = | 53 (0.870) | 5 (0.090) +TACGGAGAAT |
4/262 | 8.2 | 10.5% | intergenic (‑252/+29) | yqaB/argQ | fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg |
| ? | NC_000913 | 2818195 = | 39 (0.640) | intergenic (‑62/+1) | argZ/argY | tRNA‑Arg/tRNA‑Arg | |||||