mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944977 | NA (NA) | 13 (0.250) | 8/272 | 5.5 | 31.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038810 | 29 (0.530) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 2727889 = | NA (NA) | 13 (0.250) | 7/272 | 5.9 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227052 | 20 (0.360) | 13 (0.250) | 7/272 | 5.9 | 40.4% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1417458 = | 62 (1.130) | 4 (0.080) | 4/264 | 7.3 | 6.3% | intergenic (‑72/+30) | recE/racC | Rac prophage, exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage, uncharacterized protein |
| ? | NC_000913 | 1417483 = | 61 (1.200) | intergenic (‑97/+5) | recE/racC | Rac prophage, exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage, uncharacterized protein | |||||
| * | ? | NC_000913 | = 4038797 | 38 (0.690) | 11 (0.210) | 4/272 | 7.5 | 25.2% | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4038804 | 29 (0.550) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3944990 | NA (NA) | 11 (0.210) | 4/272 | 7.5 | 23.2% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038797 | 38 (0.690) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 227052 | 20 (0.360) | 11 (0.210) | 4/272 | 7.5 | 27.8% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 4038791 | 38 (0.720) | noncoding (1274/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3858204 | 75 (1.370) | 3 (0.060) | 3/258 | 7.9 | 4.2% | coding (200/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3858227 | 68 (1.370) | coding (177/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | 282061 = | 55 (1.000) | 4 (0.080) | 3/262 | 8.0 | 7.0% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage, putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase, CP4‑6 prophage |
| ? | NC_000913 | 282118 = | 56 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage, putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase, CP4‑6 prophage | |||||
| * | ? | NC_000913 | 1738878 = | 50 (0.910) | 4 (0.080) | 3/268 | 8.1 | 7.8% | coding (921/933 nt) | ydhB | LysR family putative transcriptional regulator |
| ? | NC_000913 | 1738904 = | 48 (0.930) | coding (895/933 nt) | ydhB | LysR family putative transcriptional regulator | |||||