mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,037,495 | 0 | A | T | 33.3% | 17.9 / 26.9 | 30 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962621 | 23 (0.450) | 23 (0.450) | 15/284 | 3.1 | 50.0% | coding (352/393 nt) | flhE | proton seal during flagellar secretion |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 16 (0.310) | 12/280 | 3.8 | 24.5% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171802 | 50 (0.970) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 4094681 | NA (NA) | 19 (0.440) +23 bp |
7/238 | 4.8 | NA | noncoding (367/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences |
| ? | NC_000913 | 4285323 = | NA (NA) | noncoding (23/77 nt) | REP320 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4094337 = | NA (NA) | 23 (0.530) +23 bp |
7/238 | 4.8 | NA | noncoding (23/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences |
| ? | NC_000913 | = 4094681 | NA (NA) | noncoding (367/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | |||||
| * | ? | NC_000913 | = 3946823 | 13 (0.250) | 13 (0.260) | 9/280 | 4.9 | 29.3% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4171800 | 50 (0.980) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 2884483 = | 55 (1.070) | 3 (0.070) | 3/248 | 7.3 | 5.8% | intergenic (‑347/+68) | casA/ygcB | CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| ? | NC_000913 | 2884501 = | 49 (1.090) | intergenic (‑365/+50) | casA/ygcB | CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 | |||||
| * | ? | NC_000913 | 4606559 = | NA (NA) | 3 (0.060) | 3/270 | 7.8 | NA | noncoding (1/92 nt) | REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 4606591 = | NA (NA) | noncoding (33/92 nt) | REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | 381898 = | NA (NA) | 3 (0.060) | 3/272 | 7.8 | NA | coding (225/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913 | 381933 = | NA (NA) | coding (260/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 2331237 = | 67 (1.300) | 3 (0.060) | 3/274 | 7.9 | 4.3% | pseudogene (3164/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family, putative membrane protein |
| ? | NC_000913 | 2331334 = | 70 (1.410) | pseudogene (3067/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family, putative membrane protein | |||||
| * | ? | NC_000913 | = 3161670 | 67 (1.300) | 4 (0.080) | 3/278 | 8.0 | 5.6% | coding (998/1413 nt) | ftsP | septal ring component that protects the divisome from stress, multicopy suppressor of ftsI(Ts) |
| ? | NC_000913 | = 3161698 | 70 (1.390) | coding (970/1413 nt) | ftsP | septal ring component that protects the divisome from stress, multicopy suppressor of ftsI(Ts) | |||||