mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,946,246 | 0 | G | A | 45.0% | 174.8 / inf | 292 | noncoding (2543/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| * | NC_000913 | 986,848 | 0 | A | G | 33.8% | 573.1 / inf | 474 | F45F (TTT→TTC) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 986,863 | 0 | A | G | 32.4% | 561.5 / inf | 472 | V40V (GTT→GTC) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.0% | 525.5 / 269.3 | 369 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 986,566 | 0 | T | C | 27.4% | 399.5 / 190.0 | 261 | E139E (GAA→GAG) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 986,023 | 0 | G | A | 27.3% | 611.9 / 261.4 | 381 | G320G (GGC→GGT) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 986,569 | 0 | T | A | 26.6% | 475.4 / 190.5 | 259 | P138P (CCA→CCT) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 986,551 | 0 | A | C | 24.1% | 517.0 / 200.6 | 276 | T144T (ACT→ACG) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 986,560 | 0 | A | G | 23.3% | 438.5 / 142.4 | 241 | G141G (GGT→GGC) | ompF | outer membrane porin 1a (Ia;b;F) |
| * | NC_000913 | 986,554 | 0 | A | G | 22.6% | 511.7 / 149.1 | 265 | D143D (GAT→GAC) | ompF | outer membrane porin 1a (Ia;b;F) |
| Marginal new junction evidence (lowest skew 10 of 817 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2305015 | 268 (1.530) | 29 (0.250) +33 bp |
15/132 | 13.2 | 14.0% | noncoding (599/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305065 | NA (NA) | noncoding (649/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 225889 = | NA (NA) | 43 (0.260) | 21/184 | 15.6 | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 2729955 = | NA (NA) | 57 (0.350) | 19/186 | 16.8 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 224973 | 31 (0.180) | 58 (0.350) | 19/186 | 16.8 | 66.6% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 78 (0.450) | 78 (0.480) | 18/186 | 17.4 | 51.6% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 729363 = | 182 (1.040) | 19 (0.130) | 15/172 | 17.7 | 10.9% | intergenic (+23/‑220) | ybfA/rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 729393 = | 153 (1.010) | intergenic (+53/‑190) | ybfA/rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 78 (0.480) | 17/186 | 17.9 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 382211 | NA (NA) | 52 (0.310) | 17/188 | 18.1 | NA | noncoding (952/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382218 | NA (NA) | noncoding (959/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1697335 | 185 (1.060) | 22 (0.130) | 15/186 | 19.1 | 11.2% | coding (706/768 nt) | hdhA | 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| ? | NC_000913 | = 1697340 | 174 (1.060) | coding (701/768 nt) | hdhA | 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | 715211 = | 178 (1.020) | 17 (0.110) | 13/176 | 19.4 | 9.7% | intergenic (+13/‑201) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913 | 715243 = | NA (NA) | intergenic (+45/‑169) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||