mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3110452 = | 62 (1.090) | 8 (0.150) | 6/278 | 7.2 | 12.4% | intergenic (+13/+136) | pheV/yghD | tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein |
| ? | NC_000913 | 3110473 = | 54 (1.000) | intergenic (+34/+115) | pheV/yghD | tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein | |||||
| * | ? | NC_000913 | 4542683 = | 40 (0.700) | 5 (0.090) | 5/276 | 7.7 | 10.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 45 (0.840) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3648347 = | 54 (0.950) | 4 (0.080) | 4/272 | 8.3 | 7.3% | noncoding (55/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin |
| ? | NC_000913 | 3648374 = | 51 (0.970) | noncoding (82/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | NC_000913 | 3648116 = | 55 (0.970) | 4 (0.080) | 4/272 | 8.3 | 7.3% | noncoding (55/84 nt) | agrA | inactive antisense sRNA |
| ? | NC_000913 | 3648374 = | 51 (0.970) | noncoding (82/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | NC_000913 | = 3386199 | 55 (0.970) | 5 (0.100) | 4/272 | 8.3 | 9.0% | intergenic (‑72/+20) | yhcO/aaeB | putative barnase inhibitor/p‑hydroxybenzoic acid efflux system component |
| ? | NC_000913 | = 3386204 | 50 (0.950) | intergenic (‑77/+15) | yhcO/aaeB | putative barnase inhibitor/p‑hydroxybenzoic acid efflux system component | |||||
| * | ? | NC_000913 | = 699431 | 55 (0.970) | 4 (0.070) | 4/280 | 8.4 | 6.4% | noncoding (7/98 nt) | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3639230 | 64 (1.180) | noncoding (23/98 nt) | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4168026 = | NA (NA) | 4 (0.070) | 4/288 | 8.6 | 100% | noncoding (1369/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4168071 = | 0 (0.000) | noncoding (1414/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 4036898 = | NA (NA) | 4 (0.070) | 4/288 | 8.6 | 100% | noncoding (1369/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4036943 = | 0 (0.000) | noncoding (1414/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3943175 = | NA (NA) | 4 (0.070) | 4/288 | 8.6 | 100% | noncoding (1369/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 3943220 = | 0 (0.000) | noncoding (1414/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 225136 = | NA (NA) | 4 (0.070) | 4/288 | 8.6 | NA | noncoding (1366/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225187 = | NA (NA) | noncoding (1417/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||