mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 164 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4639198 = | 149 (0.940) | 4 (0.030) | 4/254 | NT | 2.6% | coding (1021/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | 4639248 = | 161 (1.070) | coding (1071/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4638367 | 144 (0.910) | 4 (0.030) | 3/254 | NT | 2.8% | coding (190/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | = 4638387 | 136 (0.900) | coding (210/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4621981 | 171 (1.080) | 4 (0.030) | 4/254 | NT | 2.3% | coding (213/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4622003 | 171 (1.130) | coding (235/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | = 4614762 | 96 (0.610) | 4 (0.030) | 4/258 | NT | 3.8% | coding (782/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4614786 | 109 (0.710) | coding (758/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | = 4559488 | 152 (0.960) | 6 (0.040) | 6/264 | NT | 3.5% | coding (39/1173 nt) | iadA | isoaspartyl dipeptidase |
| ? | NC_000913 | = 4559512 | 180 (1.150) | coding (15/1173 nt) | iadA | isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | 4546905 = | 217 (1.370) | 6 (0.040) | 6/252 | NT | 2.6% | coding (1810/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | NC_000913 | 4546951 = | 237 (1.580) | coding (1856/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | NC_000913 | = 4534139 | 134 (0.850) | 4 (0.030) | 4/246 | NT | 2.9% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 142 (0.970) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4523274 = | 175 (1.110) | 4 (0.030) | 4/258 | NT | 2.4% | coding (821/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4523298 = | 160 (1.040) | coding (797/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 4404334 = | 59 (0.370) | 4 (0.030) | 3/254 | NT | 6.6% | intergenic (+30/‑52) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein |
| ? | NC_000913 | 4404361 = | 57 (0.380) | intergenic (+57/‑25) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein | |||||
| * | ? | NC_000913 | = 4332094 | NA (NA) | 8 (0.050) | 5/246 | NT | 6.2% | intergenic (+90/‑22) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
| ? | NC_000913 | = 4332102 | 120 (0.820) | intergenic (+98/‑14) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||