mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 68 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4558302 = | 220 (1.070) | 3 (0.020) | 3/300 | NT | 1.5% | intergenic (‑13/+52) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | 4558349 = | 183 (0.960) | intergenic (‑60/+5) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | = 4542690 | 102 (0.490) | 6 (0.030) | 6/306 | NT | 4.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 135 (0.690) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4384427 = | 183 (0.890) | 3 (0.010) | 3/316 | NT | 1.6% | coding (589/1503 nt) | yjeM | putative transporter |
| ? | NC_000913 | 4384467 = | 189 (0.940) | coding (629/1503 nt) | yjeM | putative transporter | |||||
| * | ? | NC_000913 | 4369146 = | 159 (0.770) | 4 (0.020) | 4/304 | NT | 2.6% | intergenic (+6/+10) | fxsA/yjeH | suppressor of F exclusion of phage T7/putative transporter |
| ? | NC_000913 | 4369185 = | 152 (0.790) | coding (1228/1257 nt) | yjeH | putative transporter | |||||
| * | ? | NC_000913 | 4295801 = | NA (NA) | 5 (0.030) +GTGTGAAT |
9/308 | NT | 2.9% | intergenic (+7/+635) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | 4296061 = | 174 (0.840) | noncoding (227/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4294530 | 156 (0.760) | 4 (0.020) | 4/308 | NT | 2.5% | coding (50/1314 nt) | gltP | glutamate/aspartate:proton symporter |
| ? | NC_000913 | = 4294562 | 158 (0.810) | coding (82/1314 nt) | gltP | glutamate/aspartate:proton symporter | |||||
| * | ? | NC_000913 | 4272636 = | 194 (0.940) | 7 (0.040) | 7/314 | NT | 3.5% | coding (1236/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | 4272663 = | 194 (0.970) | coding (1209/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | = 4254356 | 251 (1.220) | 4 (0.020) | 4/316 | NT | 1.7% | coding (2111/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| ? | NC_000913 | = 4254384 | 231 (1.150) | coding (2083/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase | |||||
| * | ? | NC_000913 | = 3901949 | 193 (0.940) | 3 (0.020) | 3/308 | NT | 1.5% | coding (272/1617 nt) | bglH | carbohydrate‑specific outer membrane porin, cryptic |
| ? | NC_000913 | = 3901970 | 217 (1.110) | coding (251/1617 nt) | bglH | carbohydrate‑specific outer membrane porin, cryptic | |||||
| * | ? | NC_000913 | = 3880655 | 248 (1.200) | 4 (0.020) | 4/304 | NT | 1.7% | coding (567/1074 nt) | recF | gap repair protein |
| ? | NC_000913 | = 3880717 | 237 (1.220) | coding (505/1074 nt) | recF | gap repair protein | |||||