mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,781,152 | 0 | A | G | 22.3% | 190.4 / 22.2 | 103 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (lowest skew 10 of 140 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2316985 | NA (NA) | 3 (0.040) +40 bp |
3/118 | 12.2 | 3.3% | noncoding (152/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4549883 | 147 (1.210) | intergenic (+173/+70) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | = 3110441 | 123 (1.010) | 17 (0.150) +AATTCATAT |
6/180 | 13.8 | 14.2% | noncoding (76/76 nt) | pheV | tRNA‑Phe |
| ? | NC_000913 | 4362516 = | 103 (0.850) | intergenic (‑163/+35) | yjdQ/pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe | |||||
| * | ? | NC_000913 | 998439 = | 160 (1.310) | 7 (0.060) | 6/180 | 13.8 | 4.7% | intergenic (+32/‑51) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| ? | NC_000913 | 998461 = | 136 (1.230) | intergenic (+54/‑29) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone | |||||
| * | ? | NC_000913 | 2729629 = | NA (NA) | 9 (0.070) | 7/198 | 14.1 | NA | noncoding (1529/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729653 = | NA (NA) | noncoding (1505/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 303617 = | 154 (1.270) | 6 (0.060) | 5/172 | 14.1 | 4.0% | intergenic (+12/+236) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | 303650 = | 153 (1.450) | intergenic (+45/+203) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | = 3792764 | 173 (1.420) | 7 (0.060) | 5/176 | 14.3 | 4.3% | intergenic (‑213/+62) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| ? | NC_000913 | = 3792768 | 160 (1.480) | intergenic (‑217/+58) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown | |||||
| * | ? | NC_000913 | 147909 = | 126 (1.040) | 5 (0.050) | 5/178 | 14.4 | 4.3% | intergenic (+39/+35) | yadD/panC | transposase_31 family protein/pantothenate synthetase |
| ? | NC_000913 | 147940 = | 108 (0.990) | intergenic (+70/+4) | yadD/panC | transposase_31 family protein/pantothenate synthetase | |||||
| * | ? | NC_000913 | 3423376 = | 96 (0.790) | 24 (0.200) | 6/194 | 14.5 | 20.3% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 4035358 | NA (NA) | 8 (0.070) | 6/196 | 14.6 | 100% | intergenic (+205/‑173) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4035386 | 0 (0.000) | intergenic (+233/‑145) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 2731302 = | 44 (0.360) | 8 (0.070) | 6/196 | 14.6 | 15.5% | intergenic (‑145/+298) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | NC_000913 | = 4035358 | NA (NA) | intergenic (+205/‑173) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||