mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.5% | 373.0 / 217.2 | 258 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,152 | 0 | A | G | 21.8% | 240.7 / 29.7 | 134 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (lowest skew 10 of 242 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3313196 = | 196 (1.270) | 6 (0.060) +38 bp |
5/122 | 16.8 | 4.8% | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| ? | NC_000913 | 4488512 = | NA (NA) | noncoding (8/36 nt) | REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 2305065 | NA (NA) | 6 (0.060) +37 bp |
5/124 | 17.1 | 4.7% | noncoding (649/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 196 (1.270) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | 2430982 = | 152 (0.990) | 6 (0.060) +36 bp |
5/126 | 17.3 | 5.2% | noncoding (54/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3313196 = | 196 (1.270) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 2316985 | NA (NA) | 5 (0.050) +40 bp |
4/118 | 17.3 | 5.6% | noncoding (152/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4549883 | 142 (0.920) | intergenic (+173/+70) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | = 2304953 | NA (NA) | 6 (0.060) +36 bp |
5/126 | 17.3 | 4.6% | noncoding (537/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 196 (1.270) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 2304840 | 134 (0.870) | 6 (0.060) +36 bp |
5/126 | 17.3 | 5.4% | noncoding (424/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 196 (1.270) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 2304614 | NA (NA) | 6 (0.060) +36 bp |
5/126 | 17.3 | 4.6% | noncoding (198/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 196 (1.270) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 4459872 | 137 (0.890) | 10 (0.070) | 10/180 | 18.9 | 7.5% | intergenic (+17/+28) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein |
| ? | NC_000913 | = 4459886 | 122 (0.870) | intergenic (+31/+14) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein | |||||
| * | ? | NC_000913 | = 382205 | NA (NA) | 16 (0.110) | 12/196 | 18.9 | NA | noncoding (946/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382224 | NA (NA) | noncoding (965/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3313196 = | 196 (1.270) | 5 (0.050) +36 bp |
3/126 | 19.3 | 3.8% | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| ? | NC_000913 | = 4027548 | 208 (1.350) | noncoding (227/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||