mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 162 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2701274 | 95 (0.870) | 6 (0.070) +26 bp |
6/146 | 10.7 | 8.3% | coding (456/732 nt) | pdxJ | pyridoxine 5'‑phosphate synthase |
| ? | NC_000913 | 2701301 = | 85 (0.780) | coding (429/732 nt) | pdxJ | pyridoxine 5'‑phosphate synthase | |||||
| * | ? | NC_000913 | 4542682 = | 172 (1.570) | 9 (0.090) | 9/180 | 10.8 | 5.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 131 (1.320) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4373266 = | 332 (3.040) | 8 (0.080) | 8/184 | 11.5 | 2.5% | noncoding (70/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4373296 = | 306 (3.020) | intergenic (+134/+69) | yjeI/yjeJ | DUF4156 family lipoprotein/uncharacterized protein | |||||
| * | ? | NC_000913 | 3033670 = | 104 (0.950) | 6 (0.070) +24 bp |
4/150 | 12.3 | 3.3% | coding (1505/1518 nt) | lysS | lysine tRNA synthetase, constitutive |
| ? | NC_000913 | 4353155 = | 358 (3.280) | intergenic (+74/+45) | ghoT/lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible | |||||
| * | ? | NC_000913 | 3328172 = | 124 (1.140) | 7 (0.070) | 6/178 | 12.4 | 5.8% | intergenic (+89/+67) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| ? | NC_000913 | 3328195 = | 115 (1.170) | intergenic (+112/+44) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor | |||||
| * | ? | NC_000913 | = 4542690 | 169 (1.550) | 6 (0.060) | 6/180 | 12.5 | 4.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 129 (1.300) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2884568 = | 172 (1.570) | 6 (0.060) | 6/180 | 12.5 | 3.9% | coding (2652/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| ? | NC_000913 | 2884590 = | 138 (1.390) | coding (2630/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 | |||||
| * | ? | NC_000913 | 3136613 = | 164 (1.500) | 9 (0.100) | 5/168 | 12.6 | 6.1% | intergenic (‑242/+50) | pitB/gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| ? | NC_000913 | 3136648 = | 139 (1.500) | intergenic (‑277/+15) | pitB/gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 10 (0.090) | 7/194 | 12.6 | 100% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 0 (0.000) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097062 = | 38 (0.350) | 10 (0.090) | 7/194 | 12.6 | 21.2% | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097276 = | NA (NA) | intergenic (+447/+289) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||