mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,479,764 | G→T | D79Y (GAT→TAT) | nuoH → | NADH‑quinone oxidoreductase subunit H |
| JC JC | 1,971,027 | repeat_region (+) +4 bp :: Δ3 bp | coding (141‑144/144 nt) | yobF → | DUF2527 domain‑containing protein |
| RA | 2,413,243 | (A)7→6 | intergenic (‑157/+174) | insD1 ← / ← paaY | hypothetical protein/phenylacetic acid degradation protein PaaY |
| RA | 2,993,533 | A→G | L55S (TTG→TCG) | rcdA ← | DNA‑binding transcriptional regulator |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| RA | 3,701,765 | Δ1 bp | coding (2129/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| RA | 4,546,838 | T→G | T406P (ACC→CCC) | rho ← | transcription termination factor Rho |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 250373 = | 17 (0.040) | 602 (1.400) | 218/300 | 0.0 | 97.2% | pseudogene (1069/1607 nt) | ECDH1_RS01185 | hypothetical protein |
| ? | DH1 | = 1587940 | NA (NA) | noncoding (1195/1198 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2443519 | 11 (0.030) | 370 (1.040) | 187/248 | 0.0 | 97.5% | intergenic (+226/‑735) | uspF/ynaE | universal stress protein F/cold‑shock protein |
| ? | DH1 | 2466580 = | 10 (0.030) | coding (51/936 nt) | ttcA | tRNA 2‑thiocytidine(32) synthetase TtcA | |||||
| * | ? | DH1 | = 2668875 | 124 (0.290) | 270 (0.700) | 164/268 | 0.8 | 69.1% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 131 (0.340) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 123 (0.320) | 238 (0.620) | 148/268 | 2.0 | 66.1% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||