mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,284,869 | G→A | G290S (GGT→AGT) | dapA → | 4‑hydroxy‑tetrahydrodipicolinate synthase |
| RA | 1,971,067 | A→C | K9Q (AAG→CAG) | cspC → | cold‑shock protein CspC |
| RA | 2,568,066 | 2 bp→CT | coding (522‑523/720 nt) | tonB ← | protein TonB |
| JC JC | 2,570,976 | Δ1 bp :: repeat_region (+) +9 bp | coding (17‑25/285 nt) | yciY ← | hypothetical protein |
| RA | 2,688,963 | A→C | K404T (AAG→ACG) | purB → | adenylosuccinate lyase |
| RA | 2,730,866 | T→G | I39L (ATC→CTC) | fabH ← | 3‑oxoacyl‑ACP synthase III |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| RA | 4,137,737 | G→A | intergenic (‑31/+145) | sugE ← / ← ecnB | quaternary ammonium compound‑resistance protein SugE/entericidin B |
| RA | 4,547,872 | C→T | G61E (GGA→GAA) | rho ← | transcription termination factor Rho |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2668875 | 68 (0.170) | 246 (0.710) | 151/268 | 1.2 | 78.5% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 74 (0.210) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 67 (0.190) | 281 (0.810) | 167/268 | 0.4 | 80.9% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||