mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 2,204,804 | Δ120 bp | intergenic (‑239/‑54) | tqsA ← / → mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 300335 | NA (NA) | 292 (0.580) | 173/300 | 1.6 | 46.4% | noncoding (772/773 nt) | repeat_region | repeat region |
| ? | DH1 | 490607 = | 338 (0.670) | coding (3102/3801 nt) | yhdP | DUF3971 domain‑containing protein | |||||
| * | ? | DH1 | = 1463490 | 289 (0.580) | 363 (0.720) | 153/300 | 2.8 | 55.7% | coding (13/1203 nt) | ackA | acetate kinase |
| ? | DH1 | 1586746 = | NA (NA) | noncoding (1/1198 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1702500 | 208 (0.420) | 242 (0.500) | 164/292 | 1.8 | 51.7% | noncoding (5/1205 nt) | repeat_region | repeat region |
| ? | DH1 | 1703700 = | 250 (0.510) | noncoding (1205/1205 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1967355 | 204 (0.410) | 214 (0.450) | 150/286 | 2.5 | 52.2% | noncoding (6/1206 nt) | repeat_region | repeat region |
| ? | DH1 | 1968555 = | 198 (0.410) | noncoding (1206/1206 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2478888 | 207 (0.410) | 250 (0.520) | 164/290 | 1.8 | 56.9% | noncoding (5/1204 nt) | repeat_region | repeat region |
| ? | DH1 | 2480088 = | 179 (0.370) | intergenic (‑73/‑63) | insH1/fnr | transposase/fumarate and nitrate reduction regulatory protein | |||||
| * | ? | DH1 | = 2678609 | 203 (0.410) | 259 (0.530) | 161/292 | 2.0 | 54.9% | noncoding (1/1259 nt) | repeat_region | repeat region |
| ? | DH1 | 2679871 = | 228 (0.470) | intergenic (‑69/+280) | insE1/lit | transposase/bacteriophage T4 late gene expression‑blocking protein | |||||
| * | ? | DH1 | = 2788747 | 190 (0.380) | 228 (0.470) | 157/292 | 2.3 | 54.1% | noncoding (5/1206 nt) | repeat_region | repeat region |
| ? | DH1 | 2789947 = | 202 (0.410) | noncoding (1205/1206 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 3575873 | 303 (0.600) | 305 (0.630) | 191/292 | 0.6 | 52.8% | noncoding (3/1201 nt) | repeat_region | repeat region |
| ? | DH1 | 3577073 = | 251 (0.510) | intergenic (+151/‑282) | insH1/yagM | transposase/hypothetical protein | |||||
| * | ? | DH1 | 3970034 = | 338 (0.670) | 320 (0.680) | 172/282 | 1.1 | 50.4% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 313 (0.660) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970042 | 336 (0.670) | 335 (0.710) | 190/282 | 0.5 | 51.6% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 313 (0.660) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970987 | 258 (0.510) | 295 (0.630) | 180/282 | 0.8 | 53.4% | intergenic (‑37/+16) | fimE/insB1 | tyrosine recombinase/transposase |
| ? | DH1 | 3971764 = | 273 (0.580) | intergenic (‑258/+482) | insB1/fimB | transposase/tyrosine recombinase | |||||
| * | ? | DH1 | = 4079176 | 316 (0.630) | 261 (0.550) | 162/284 | 1.7 | 48.0% | noncoding (1/771 nt) | repeat_region | repeat region |
| ? | DH1 | 4079953 = | 266 (0.560) | intergenic (+24/+135) | insB1/ytfH | transposase/HxlR family transcriptional regulator | |||||
| * | ? | DH1 | = 4493676 | 290 (0.580) | 294 (0.590) | 180/300 | 1.3 | 50.5% | coding (569/1641 nt) | ubiB | ubiquinone biosynthesis protein UbiB |
| ? | DH1 | 4493689 = | 286 (0.570) | coding (556/1641 nt) | ubiB | ubiquinone biosynthesis protein UbiB | |||||