mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 256 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,184,649 | 0 | A | G | 60.3% | 174.0 / inf | 377 | noncoding (35/75 nt) | ECDH1_RS15800 | tRNA‑TERM |
| * | DH1 | 2,732,543 | 0 | A | G | 57.3% | 244.1 / inf | 452 | S135P (TCG→CCG) | yceD | hypothetical protein |
| * | DH1 | 2,520,818 | 0 | G | A | 56.8% | 176.6 / inf | 348 | C110Y (TGT→TAT) | puuP | putrescine importer |
| * | DH1 | 1,970,908 | 0 | G | T | 56.5% | 135.5 / inf | 447 | F6L (TTC→TTA) | ECDH1_RS09670 | hypothetical protein |
| * | DH1 | 1,743,558 | 0 | T | C | 56.0% | 197.2 / inf | 460 | V385V (GTT→GTC) | wzc | tyrosine‑protein kinase wzc |
| * | DH1 | 1,150,770 | 0 | T | C | 56.0% | 179.4 / inf | 453 | I394I (ATT→ATC) | clpB | chaperone protein ClpB |
| * | DH1 | 2,234,799 | 0 | A | T | 55.8% | 172.6 / inf | 373 | Q209L (CAG→CTG) | ydfU | hypothetical protein |
| * | DH1 | 1,983,639 | 0 | G | A | 55.5% | 206.6 / inf | 445 | P12L (CCC→CTC) | pabB | aminodeoxychorismate synthase subunit I |
| * | DH1 | 3,876,104 | 0 | G | C | 55.3% | 199.0 / inf | 458 | P77R (CCC→CGC) | creC | two‑component sensor histidine kinase |
| * | DH1 | 298,246 | 0 | T | C | 55.2% | 186.8 / inf | 543 | V436A (GTC→GCC) | ggt | gamma‑glutamyltransferase |
| * | DH1 | 1,704,610 | 0 | A | G | 55.0% | 147.9 / inf | 397 | Q277Q (CAA→CAG) | ECDH1_RS08300 | galactitol permease IIC component |
| * | DH1 | 1,366,363 | 0 | A | G | 54.7% | 111.7 / inf | 384 | L327P (CTG→CCG) | yfeO | ion channel protein |
| * | DH1 | 2,587,809 | 0 | T | C | 54.6% | 106.2 / inf | 367 | pseudogene (428/1014 nt) | galU | response regulator of RpoS |
| * | DH1 | 359,580 | 0 | A | G | 54.5% | 149.0 / inf | 488 | A438A (GCT→GCC) | mrcA | penicillin‑binding protein 1A |
| * | DH1 | 1,922,269 | 0 | T | C | 54.5% | 132.5 / inf | 419 | D666D (GAT→GAC) | torZ | Trimethylamine‑N‑oxide reductase 2 |
| * | DH1 | 1,766,796 | 1 | . | C | 54.3% | 793.8 / inf | 406 | pseudogene (717/899 nt) | rfbB | dTDP‑4‑dehydrorhamnose reductase |
| * | DH1 | 1,831,549 | 0 | A | C | 54.2% | 275.0 / inf | 415 | V523V (GTT→GTG) | yeeJ | inverse autotransporter adhesin‑like protein YeeJ |
| * | DH1 | 1,740,513 | 0 | T | C | 54.2% | 140.7 / inf | 573 | intergenic (‑359/‑300) | yegH/wza | hypothetical protein/lipoprotein |
| * | DH1 | 1,883,418 | 0 | C | T | 54.1% | 162.0 / inf | 505 | H24Y (CAC→TAC) | uvrC | excinuclease ABC subunit C |
| * | DH1 | 2,102,378 | 0 | T | C | 54.0% | 104.0 / inf | 410 | K172E (AAA→GAA) | ydiF | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 3203897 = | 304 (0.610) | 194 (0.410) | 140/284 | 3.2 | 40.4% | coding (512/708 nt) | ybeR | hypothetical protein |
| ? | DH1 | = 3203926 | 285 (0.600) | coding (483/708 nt) | ybeR | hypothetical protein | |||||
| * | ? | DH1 | 1463487 = | 271 (0.540) | 393 (0.780) | 148/300 | 3.2 | 59.2% | coding (16/1203 nt) | ackA | acetate kinase |
| ? | DH1 | = 1587940 | NA (NA) | noncoding (1195/1198 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 299568 = | NA (NA) | 235 (0.470) | 146/300 | 3.3 | 43.1% | noncoding (5/773 nt) | repeat_region | repeat region |
| ? | DH1 | = 490615 | 310 (0.620) | coding (3110/3801 nt) | yhdP | DUF3971 domain‑containing protein | |||||
| * | ? | DH1 | = 2991630 | 269 (0.540) | 333 (0.670) | 144/298 | 3.4 | 55.3% | coding (331/1686 nt) | ybjL | transporter |
| ? | DH1 | = 3577068 | NA (NA) | noncoding (1198/1201 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2201911 | 201 (0.400) | 200 (0.400) | 141/300 | 3.7 | 62.5% | coding (1337/1533 nt) | pntA | NAD(P) transhydrogenase subunit alpha |
| ? | DH1 | 2204947 = | 39 (0.080) | intergenic (‑382/‑30) | tqsA/mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ | |||||
| * | ? | DH1 | 2991627 = | 275 (0.550) | 244 (0.490) | 139/300 | 3.9 | 47.0% | coding (328/1686 nt) | ybjL | transporter |
| ? | DH1 | 3575874 = | NA (NA) | noncoding (4/1201 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 490615 | 310 (0.620) | 218 (0.440) | 136/300 | 4.2 | 41.3% | coding (3110/3801 nt) | yhdP | DUF3971 domain‑containing protein |
| ? | DH1 | 2830574 = | NA (NA) | noncoding (5/773 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 2079930 = | 413 (0.820) | 123 (0.270) | 95/276 | 7.5 | 25.4% | coding (395/984 nt) | pheS | phenylalanine‑‑tRNA ligase subunit alpha |
| ? | DH1 | = 2092203 | 343 (0.740) | coding (838/2379 nt) | ppsA | phosphoenolpyruvate synthase | |||||
| * | ? | DH1 | = 2668875 | 339 (0.680) | 79 (0.180) | 69/268 | 11.1 | 20.7% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 303 (0.680) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 298 (0.660) | 75 (0.170) | 65/268 | 11.9 | 20.2% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||