mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 132 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4631855 | 144 (1.170) | 4 (0.030) | 3/266 | NT | 2.7% | coding (1123/1938 nt) | slt | lytic murein transglycosylase, soluble |
| ? | NC_000913 | = 4631875 | 153 (1.300) | coding (1143/1938 nt) | slt | lytic murein transglycosylase, soluble | |||||
| * | ? | NC_000913 | = 4553014 | 147 (1.190) | 3 (0.030) | 3/270 | NT | 2.1% | coding (114/1461 nt) | uxuB | D‑mannonate oxidoreductase, NAD‑dependent |
| ? | NC_000913 | = 4553055 | 135 (1.130) | coding (155/1461 nt) | uxuB | D‑mannonate oxidoreductase, NAD‑dependent | |||||
| * | ? | NC_000913 | 4545987 = | 121 (0.980) | 3 (0.030) | 3/260 | NT | 2.5% | coding (892/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | NC_000913 | 4546081 = | 117 (1.010) | coding (986/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | NC_000913 | 4528019 = | 126 (1.020) | 3 (0.030) | 3/262 | NT | 2.5% | noncoding (43/90 nt) | ryjB | novel sRNA, function unknown |
| ? | NC_000913 | 4528061 = | 115 (0.990) | noncoding (85/90 nt) | ryjB | novel sRNA, function unknown | |||||
| * | ? | NC_000913 | = 4425435 | 115 (0.930) | 3 (0.030) | 3/266 | NT | 2.5% | coding (318/396 nt) | rpsF | 30S ribosomal subunit protein S6 |
| ? | NC_000913 | = 4425461 | 124 (1.050) | coding (344/396 nt) | rpsF | 30S ribosomal subunit protein S6 | |||||
| * | ? | NC_000913 | = 4417460 | 132 (1.070) | 3 (0.030) | 3/264 | NT | 2.3% | coding (509/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | = 4417479 | 128 (1.090) | coding (528/750 nt) | yjfP | acyl CoA esterase | |||||
| * | ? | NC_000913 | 4357066 = | 126 (1.020) | 5 (0.040) | 3/266 | NT | 3.9% | coding (1552/2148 nt) | cadA | lysine decarboxylase, acid‑inducible |
| ? | NC_000913 | 4357097 = | 129 (1.090) | coding (1521/2148 nt) | cadA | lysine decarboxylase, acid‑inducible | |||||
| * | ? | NC_000913 | 4344446 = | 122 (0.990) | 4 (0.030) | 4/264 | NT | 3.4% | coding (1078/1422 nt) | melB | melibiose:sodium symporter |
| ? | NC_000913 | 4344485 = | 114 (0.970) | coding (1117/1422 nt) | melB | melibiose:sodium symporter | |||||
| * | ? | NC_000913 | = 4341795 | 152 (1.230) | 3 (0.030) | 3/242 | NT | 2.2% | intergenic (‑167/‑116) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | = 4341815 | 129 (1.200) | intergenic (‑187/‑96) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4320612 = | 166 (1.350) | 3 (0.030) | 3/268 | NT | 1.9% | coding (52/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| ? | NC_000913 | 4320644 = | 151 (1.270) | coding (20/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||