mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.1% | 99.7 / 109.3 | 121 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 422,429 | 0 | T | G | 29.4% | 148.5 / 14.2 | 102 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 422,432 | 0 | T | G | 22.8% | 184.2 / 11.9 | 102 | intergenic (+73/‑86) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 1,552,191 | 0 | C | A | 22.0% | 194.2 / 19.5 | 109 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| Marginal new junction evidence (lowest skew 10 of 729 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315563 = | NA (NA) | 19 (0.150) | 12/278 | 8.6 | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 3267361 = | 168 (1.220) | 16 (0.120) | 11/278 | 9.0 | 8.9% | intergenic (‑296/‑19) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
| ? | NC_000913 | 3267401 = | 171 (1.330) | coding (22/219 nt) | tdcR | L‑threonine dehydratase operon activator protein | |||||
| * | ? | NC_000913 | 3227693 = | 186 (1.350) | 11 (0.090) | 10/276 | 9.3 | 6.1% | intergenic (+26/‑108) | ygjI/ygjJ | putative transporter/putative periplasmic protein |
| ? | NC_000913 | 3227727 = | 169 (1.320) | intergenic (+60/‑74) | ygjI/ygjJ | putative transporter/putative periplasmic protein | |||||
| * | ? | NC_000913 | 4503856 = | 276 (2.000) | 12 (0.090) | 10/284 | 9.5 | 4.5% | intergenic (‑425/‑202) | insG/yjhB | IS4 transposase/putative MFS transporter, membrane protein |
| ? | NC_000913 | 4503881 = | 247 (1.880) | intergenic (‑450/‑177) | insG/yjhB | IS4 transposase/putative MFS transporter, membrane protein | |||||
| * | ? | NC_000913 | = 1396634 | NA (NA) | 17 (0.130) | 10/284 | 9.5 | 12.2% | noncoding (591/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428170 = | 128 (0.930) | noncoding (625/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 17 (0.130) | 10/284 | 9.5 | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 9 (0.070) | 9/280 | 9.8 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2730312 | NA (NA) | 16 (0.120) | 9/284 | 9.9 | NA | noncoding (846/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2730346 | NA (NA) | noncoding (812/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1944388 = | 116 (0.840) | 14 (0.110) | 9/286 | 9.9 | 11.2% | coding (969/1011 nt) | ruvB | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| ? | NC_000913 | 1944415 = | 110 (0.830) | coding (942/1011 nt) | ruvB | ATP‑dependent DNA helicase, component of RuvABC resolvasome | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 45 (0.340) | 9/286 | 9.9 | 87.0% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 7 (0.050) | noncoding (488/1195 nt) | IS5 | repeat region | |||||