mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,026 | 0 | C | T | 50.8% | 43.7 / 186.4 | 132 | noncoding (268/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 3,206,435 | 0 | C | T | 30.3% | 49.7 / 10.0 | 33 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 835,810 | 0 | C | T | 28.8% | 87.4 / 37.1 | 59 | A188V (GCG→GTG) | ybiB | nonspecific DNA‑binding protein YbiB |
| * | NC_000913 | 2,326,450 | 0 | T | G | 23.1% | 78.4 / 12.6 | 40 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 60 (1.220) | 7 (0.150) | 7/258 | 3.1 | 12.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 42 (0.910) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 6 (0.150) | 4/224 | 3.6 | 12.8% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 41 (1.030) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 7 (0.150) | 4/260 | 4.1 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 2990683 | 107 (2.180) | 4 (0.080) | 4/270 | 4.2 | 3.6% | pseudogene (130/490 nt) | ygeF | protein YgeF |
| ? | NC_000913 | 2990689 = | 107 (2.220) | pseudogene (136/490 nt) | ygeF | protein YgeF | |||||
| * | ? | NC_000913 | = 4446028 | 44 (0.890) | 3 (0.070) | 3/244 | 4.3 | 5.4% | coding (1917/3780 nt) | tamB | translocation and assembly module subunit TamB |
| ? | NC_000913 | = 4455567 | 66 (1.520) | coding (43/999 nt) | fbp | fructose‑1,6‑bisphosphatase 1 | |||||
| * | ? | NC_000913 | = 1999928 | 50 (1.020) | 5 (0.110) | 3/246 | 4.3 | 11.7% | coding (458/801 nt) | tcyJ | cystine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 2009249 | 31 (0.710) | coding (973/1206 nt) | yedE | putative selenium transporter YedE | |||||
| * | ? | NC_000913 | = 4568343 | 56 (1.140) | 3 (0.060) | 3/264 | 4.5 | 5.1% | coding (177/1233 nt) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| ? | NC_000913 | = 4568488 | 57 (1.210) | coding (32/1233 nt) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter | |||||
| * | ? | NC_000913 | 1407316 = | 42 (0.850) | 3 (0.060) | 3/260 | 4.5 | 7.8% | coding (480/1233 nt) | dgcM | diguanylate cyclase DgcM |
| ? | NC_000913 | 1416631 = | 31 (0.670) | coding (756/2601 nt) | recE | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific | |||||
| * | ? | NC_000913 | = 3137593 | 34 (0.690) | 3 (0.060) | 3/272 | 4.6 | 7.5% | coding (930/1860 nt) | gss | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| ? | NC_000913 | 3137600 = | 40 (0.830) | coding (923/1860 nt) | gss | fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | 377321 = | NA (NA) | 3 (0.060) | 3/270 | 4.6 | NA | intergenic (+10/+214) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| ? | NC_000913 | = 4094717 | NA (NA) | noncoding (2/34 nt) | other | REP299i | |||||