mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1060 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4620345 = | 587 (1.110) | 4 (0.010) | 3/94 | NT | 1.0% | intergenic (‑6/‑205) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | 4620392 = | 291 (0.660) | intergenic (‑53/‑158) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| * | ? | CP009273 | 4618560 = | NA (NA) | 4 (0.010) | 4/98 | NT | 0.90% | noncoding (49/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | 4618593 = | 441 (0.960) | noncoding (82/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4615686 = | 577 (1.100) | 8 (0.020) | 4/98 | NT | 1.6% | intergenic (+6/‑43) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein |
| ? | CP009273 | 4615706 = | 490 (1.060) | intergenic (+26/‑23) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein | |||||
| * | ? | CP009273 | = 4615246 | 475 (0.900) | 3 (0.010) | 3/86 | NT | 0.51% | coding (535/969 nt) | serB | 3‑phosphoserine phosphatase |
| ? | CP009273 | 4616327 = | 810 (2.000) | coding (599/1383 nt) | radA | DNA repair protein | |||||
| * | ? | CP009273 | 4607857 = | 614 (1.170) | 13 (0.030) | 7/96 | NT | 2.4% | coding (718/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| ? | CP009273 | 4607913 = | NA (NA) | coding (774/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked | |||||
| * | ? | CP009273 | = 4603957 | 306 (0.580) | 9 (0.020) | 4/94 | NT | 2.9% | coding (660/780 nt) | yjjV | putative DNase |
| ? | CP009273 | = 4603970 | 342 (0.770) | coding (673/780 nt) | yjjV | putative DNase | |||||
| * | ? | CP009273 | = 4602145 | 282 (0.540) | 4 (0.010) | 4/90 | NT | 1.6% | intergenic (+39/‑83) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| ? | CP009273 | = 4602148 | 273 (0.650) | intergenic (+42/‑80) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase | |||||
| * | ? | CP009273 | = 4586340 | 349 (0.660) | 3 (0.010) | 3/100 | NT | 0.88% | coding (534/1023 nt) | yjjN | L‑galactonate oxidoreductase |
| ? | CP009273 | = 4586395 | 361 (0.770) | coding (589/1023 nt) | yjjN | L‑galactonate oxidoreductase | |||||
| * | ? | CP009273 | 4559156 = | 904 (1.720) | 6 (0.010) | 5/96 | NT | 0.84% | pseudogene (342/921 nt) | yjiP | pseudogene, transposase_31 family protein |
| ? | CP009273 | 4559196 = | 636 (1.410) | pseudogene (382/921 nt) | yjiP | pseudogene, transposase_31 family protein | |||||
| * | ? | CP009273 | 4557863 = | 562 (1.070) | 4 (0.010) | 4/98 | NT | 0.85% | coding (474/1233 nt) | mdtM | multidrug efflux system protein |
| ? | CP009273 | 4557894 = | 444 (0.960) | coding (443/1233 nt) | mdtM | multidrug efflux system protein | |||||