mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 27.1% | 127.0 / 58.9 | 70 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 27.0% | 115.9 / 51.2 | 74 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 25.4% | 79.7 / 28.3 | 55 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 25.4% | 113.6 / 39.1 | 67 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 63 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 4542691 | 32 (0.700) | 6 (0.140) | 6/266 | 5.2 | 16.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | = 4542987 | 29 (0.670) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | = 3330414 | 51 (1.110) | 6 (0.140) | 6/270 | 5.3 | 10.8% | intergenic (+18/+168) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| ? | NC_000913_3_bme_pgi | = 3330419 | 51 (1.170) | intergenic (+23/+163) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair | |||||
| * | ? | NC_000913_3_bme_pgi | = 354697 | 50 (1.090) | 6 (0.140) | 5/270 | 5.8 | 11.1% | noncoding (99/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_bme_pgi | = 354713 | 49 (1.120) | noncoding (115/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | 3243907 = | 53 (1.150) | 5 (0.110) | 5/284 | 6.0 | 8.4% | coding (835/1413 nt) | uxaC | uronate isomerase |
| ? | NC_000913_3_bme_pgi | 3243926 = | 56 (1.220) | coding (816/1413 nt) | uxaC | uronate isomerase | |||||
| * | ? | NC_000913_3_bme_pgi | = 394471 | 36 (0.780) | 4 (0.100) | 4/258 | 6.1 | 10.9% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| ? | NC_000913_3_bme_pgi | = 394475 | 33 (0.790) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
| * | ? | NC_000913_3_bme_pgi | = 3140629 | 42 (0.910) | 4 (0.090) | 4/268 | 6.2 | 8.6% | coding (171/489 nt) | hybE | hydrogenase 2‑specific chaperone |
| ? | NC_000913_3_bme_pgi | = 3140635 | 45 (1.040) | coding (165/489 nt) | hybE | hydrogenase 2‑specific chaperone | |||||
| * | ? | NC_000913_3_bme_pgi | 2737519 = | 34 (0.740) | 4 (0.090) | 4/268 | 6.2 | 10.7% | intergenic (+24/‑80) | raiA/pheL | cold shock protein associated with 30S ribosomal subunit/pheA gene leader peptide |
| ? | NC_000913_3_bme_pgi | 2737539 = | 35 (0.810) | intergenic (+44/‑60) | raiA/pheL | cold shock protein associated with 30S ribosomal subunit/pheA gene leader peptide | |||||
| * | ? | NC_000913_3_bme_pgi | 1686709 = | 40 (0.870) | 4 (0.090) | 4/272 | 6.3 | 9.0% | intergenic (‑121/+22) | fumC/fumA | fumarate hydratase (fumarase C),aerobic Class II/fumarate hydratase (fumarase A), aerobic Class I |
| ? | NC_000913_3_bme_pgi | 1686725 = | 43 (0.980) | intergenic (‑137/+6) | fumC/fumA | fumarate hydratase (fumarase C),aerobic Class II/fumarate hydratase (fumarase A), aerobic Class I | |||||
| * | ? | NC_000913_3_bme_pgi | 1629047 = | 39 (0.850) | 4 (0.090) | 4/272 | 6.3 | 10.3% | intergenic (+9/‑168) | rspR/ydfZ | transcriptional repressor for rspAB/selenoprotein, function unknown |
| ? | NC_000913_3_bme_pgi | 1629071 = | 32 (0.730) | intergenic (+33/‑144) | rspR/ydfZ | transcriptional repressor for rspAB/selenoprotein, function unknown | |||||
| * | ? | NC_000913_3_bme_pgi | 228016 = | NA (NA) | 4 (0.090) | 4/270 | 6.3 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||