mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 28.3% | 80.4 / 27.6 | 53 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 26.9% | 82.6 / 27.8 | 52 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 26.4% | 92.7 / 40.9 | 53 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 24.5% | 74.1 / 35.1 | 54 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 284 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4239999 | 502 (12.440) | 17 (0.420) | 11/278 | 2.7 | 3.3% | intergenic (+4/+40) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913_3_pae_pgi | = 4240029 | 496 (12.290) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913_3_pae_pgi | 4248622 = | NA (NA) | 14 (0.370) | 9/264 | 3.0 | 2.8% | noncoding (42/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | 4248654 = | 482 (12.570) | noncoding (74/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4239417 = | NA (NA) | 11 (0.290) | 9/264 | 3.0 | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_pgi | 4239450 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4249767 = | 413 (10.230) | 13 (0.340) | 9/266 | 3.1 | 3.1% | intergenic (+33/‑196) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913_3_pae_pgi | 4249787 = | 413 (10.690) | intergenic (+53/‑176) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913_3_pae_pgi | 4239000 = | 420 (10.400) | 10 (0.270) | 8/256 | 3.2 | 2.5% | intergenic (+10/+37) | yjbH/yjbT | DUF940 family extracellular polysaccharide protein/putative periplasmic protein |
| ? | NC_000913_3_pae_pgi | 4239032 = | 392 (10.550) | intergenic (+42/+5) | yjbH/yjbT | DUF940 family extracellular polysaccharide protein/putative periplasmic protein | |||||
| * | ? | NC_000913_3_pae_pgi | 4248647 = | 513 (12.710) | 13 (0.340) | 8/264 | 3.3 | 4.7% | noncoding (67/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4325590 | 46 (1.200) | noncoding (529/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4248647 = | 513 (12.710) | 13 (0.340) | 8/264 | 3.3 | 4.7% | noncoding (67/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4325490 | 41 (1.070) | noncoding (429/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4248647 = | 513 (12.710) | 13 (0.340) | 8/264 | 3.3 | 4.6% | noncoding (67/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4325390 | 52 (1.360) | noncoding (329/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4248647 = | 513 (12.710) | 13 (0.340) | 8/264 | 3.3 | 4.7% | noncoding (67/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4325290 | 37 (0.970) | noncoding (229/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4248647 = | 513 (12.710) | 13 (0.340) | 8/264 | 3.3 | 4.7% | noncoding (67/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4325190 | 39 (1.020) | noncoding (129/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||