mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,121 | 0 | C | T | 53.8% | ‑2.9 / 12.0 | 13 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 195,634 | 0 | C | T | 48.5% | 33.7 / 194.0 | 140 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,348,705 | 0 | A | G | 46.0% | 11.1 / 45.2 | 37 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 195,559 | 0 | C | A | 45.0% | 82.1 / 130.7 | 111 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 699,722 | 0 | A | G | 42.9% | 1.4 / 12.7 | 14 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 3,497,741 | 1 | . | G | 37.5% | ‑0.6 / 10.1 | 8 | intergenic (‑145/+561) | PP_5562/PP_5563 | hypothetical protein/membrane protein |
| * | NC_002947 | 196,351 | 0 | C | G | 28.5% | 168.3 / 96.4 | 123 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,327 | 0 | A | C | 26.2% | 186.6 / 86.9 | 129 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,390 | 0 | T | C | 25.3% | 156.1 / 59.7 | 98 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,572 | 0 | G | A | 23.0% | 254.6 / 75.6 | 147 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,306 | 0 | T | C | 22.9% | 240.6 / 78.3 | 142 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,590 | 0 | T | C | 21.4% | 253.6 / 72.5 | 143 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,695 | 0 | G | C | 21.2% | 184.4 / 39.7 | 81 | T1067T (ACG→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,879 | 0 | G | A | 20.4% | 100.0 / 18.3 | 49 | V795V (GTG→GTA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,456,793 | 1 | . | T | 20.0% | 32.0 / 10.0 | 15 | intergenic (+44/‑137) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 67 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2957080 | 46 (0.940) | 10 (0.210) | 10/274 | 1.0 | 16.3% | intergenic (+35/‑161) | PP_2588/PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein |
| ? | NC_002947 | 2957165 = | 58 (1.230) | intergenic (+120/‑76) | PP_2588/PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein | |||||
| * | ? | NC_002947 | 2306142 = | 135 (2.770) | 5 (0.110) | 5/274 | 1.4 | 3.7% | coding (415/1719 nt) | PP_2028 | TPR repeat‑containing protein |
| ? | NC_002947 | 2306177 = | 128 (2.730) | coding (380/1719 nt) | PP_2028 | TPR repeat‑containing protein | |||||
| * | ? | NC_002947 | = 1906707 | 33 (0.680) | 4 (0.100) | 4/232 | 1.4 | 13.8% | intergenic (+47/+81) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | = 1906749 | 23 (0.580) | intergenic (+89/+39) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
| * | ? | NC_002947 | 1290107 = | 61 (1.250) | 5 (0.110) | 5/276 | 1.4 | 7.4% | coding (1380/2349 nt) | PP_1126 | hydrolase |
| ? | NC_002947 | 1290135 = | 65 (1.370) | coding (1408/2349 nt) | PP_1126 | hydrolase | |||||
| * | ? | NC_002947 | 6103193 = | 61 (1.250) | 4 (0.090) | 4/270 | 1.5 | 6.4% | coding (26/855 nt) | PP_5353 | hypothetical protein |
| ? | NC_002947 | 6103238 = | 59 (1.270) | coding (71/855 nt) | PP_5353 | hypothetical protein | |||||
| * | ? | NC_002947 | 5976547 = | 147 (3.020) | 4 (0.090) | 4/268 | 1.5 | 3.0% | coding (348/1491 nt) | yifB | ATP‑dependent chelatase |
| ? | NC_002947 | 5976606 = | 117 (2.550) | coding (407/1491 nt) | yifB | ATP‑dependent chelatase | |||||
| * | ? | NC_002947 | = 5864727 | 142 (2.920) | 4 (0.090) | 4/268 | 1.5 | 2.7% | coding (1424/2253 nt) | cadA‑III | cadmium translocating P‑type ATPase |
| ? | NC_002947 | = 5864760 | 152 (3.310) | coding (1391/2253 nt) | cadA‑III | cadmium translocating P‑type ATPase | |||||
| * | ? | NC_002947 | = 5857177 | 154 (3.160) | 4 (0.090) | 4/274 | 1.5 | 2.6% | coding (1104/1392 nt) | PP_5133 | membrane protein |
| ? | NC_002947 | = 5857207 | 151 (3.210) | coding (1134/1392 nt) | PP_5133 | membrane protein | |||||
| * | ? | NC_002947 | 5836393 = | 38 (0.780) | 4 (0.090) | 4/270 | 1.5 | 10.2% | coding (488/1302 nt) | PP_5115 | zinc protease |
| ? | NC_002947 | 5836422 = | 34 (0.730) | coding (517/1302 nt) | PP_5115 | zinc protease | |||||
| * | ? | NC_002947 | = 5658597 | 158 (3.250) | 4 (0.090) | 4/274 | 1.5 | 2.5% | coding (652/993 nt) | sahR | methionine metabolism transcriptional regulator |
| ? | NC_002947 | = 5658633 | 165 (3.510) | coding (688/993 nt) | sahR | methionine metabolism transcriptional regulator | |||||