mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,790 | G→A | A32T (GCA→ACA) | yaaA → | hypothetical protein |
| RA | 39,378 | C→A | D586Y (GAT→TAT) | mecA ← | penicillin binding protein 2 prime |
| RA | 76,969 | G→A | intergenic (+1027/‑107) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 195,286 | T→A | intergenic (‑97/‑82) | USA300HOU_0183 ← / → USA300HOU_0184 | hypothetical protein/hypothetical protein |
| RA | 355,466 | G→A | P412S (CCA→TCA) | brnQ1 ← | LIVCS family branched chain amino acid:cation symporter |
| RA | 396,540 | G→A | A208T (GCA→ACA) | USA300HOU_0364 → | possible lipoprotein |
| RA | 607,884 | G→A | R209* (CGA→TGA) | dck ← | deoxynucleoside kinase |
| RA | 629,681 | C→A | L84I (CTA→ATA) | hxlA → | possible 3‑hexulose‑6‑phosphate synthase |
| RA | 665,392 | T→G | L79* (TTA→TGA) | iolS → | possible acetytransferase |
| RA | 707,910 | A→G | intergenic (‑1/‑121) | mntB ← / → sirR | ABC superfamily ATP binding cassette transporter, ABC protein/possible metal‑dependent transcriptional regulator |
| RA | 874,718 | A→C | K541N (AAA→AAC) | clfA → | fibrinogen‑binding protein |
| RA | 1,064,254 | Δ1 bp | coding (235/1218 nt) | brpA ← | LytR family transcriptional regulator |
| RA | 1,233,504 | T→A | V470D (GTT→GAT) | prkC → | non‑specific serine/threonine protein kinase |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,440,085 | G→T | intergenic (‑45/‑891) | cspA ← / → xpaC | cold shock protein CspA/5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 1,744,362 | G→A | H104Y (CAC→TAC) | apt ← | adenine phosphoribosyltransferase |
| MC JC | 1,747,382 | (TAC)3→2 | coding (2065‑2067/2280 nt) | secDF ← | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| RA | 1,761,889 | C→A | D388Y (GAT→TAT) | folC ← | tetrahydrofolate synthase |
| RA | 1,963,768 | C→G | V365L (GTA→CTA) | hemG ← | protoporphyrinogen oxidase |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,027,672 | C→A | G92V (GGC→GTC) | vraS ← | sensor histidine kinase VraS |
| RA | 2,241,539 | T→C | intergenic (‑182/+284) | murZ ← / ← fbaA | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase/fructose‑bisphosphate aldolase |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,289,262 | C→G | W76C (TGG→TGC) | ybbP ← | hypothetical membrane protein |
| RA | 2,352,815 | G→A | A92V (GCA→GTA) | rpsI ← | ribosomal protein S9 |
| RA | 2,454,626 | A→T | L48L (CTA→CTT) | USA300HOU_2315 → | hypothetical membrane protein |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| RA | 2,544,339 | C→T | V189V (GTC→GTT) | hlgC → | gamma hemolysin component C |
| RA | 2,709,576 | C→T | G451S (GGT→AGT) | oatA ← | possible acetyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 37 (1.110) | 38 (1.560) +40 bp |
24/216 | 0.1 | 58.5% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||
| * | ? | CP000730 | 2085296 = | 21 (0.630) | 6 (0.200) | 6/268 | 2.9 | 21.1% | intergenic (‑558/‑400) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | = 2128343 | 26 (0.860) | intergenic (+57/+1062) | int/hlgB | bacteriophage integrase/possible leukocidin subunit | |||||