mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 33.0% | 91.2 / 62.3 | 94 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 31.0% | 80.3 / 65.7 | 100 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 28.7% | 96.3 / 60.9 | 100 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 526,792 | 0 | A | C | 25.3% | 403.3 / 144.2 | 251 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,796 | 0 | C | G | 24.7% | 541.5 / 173.4 | 248 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,800 | 0 | A | G | 21.2% | 484.6 / 121.5 | 241 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 164 (0.750) | 45 (0.280) | 14/418 | 17.0 | 25.5% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 144 (0.910) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 18 (0.090) | 16/560 | 20.9 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1096961 = | 164 (0.750) | 94 (0.660) +101 bp |
5/376 | 21.7 | 43.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097583 | 217 (0.990) | noncoding (70/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1061946 | 225 (1.030) | 10 (0.050) | 10/562 | 24.8 | 4.4% | coding (148/600 nt) | torD | TorA‑maturation chaperone |
| ? | NC_000913 | = 1061951 | 215 (1.010) | coding (153/600 nt) | torD | TorA‑maturation chaperone | |||||
| * | ? | NC_000913 | = 4171445 | NA (NA) | 21 (0.100) | 10/572 | 25.1 | NA | noncoding (2805/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4212832 | NA (NA) | noncoding (2790/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 2282829 | 214 (0.980) | 10 (0.050) | 9/554 | 25.2 | 4.7% | intergenic (+28/+111) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| ? | NC_000913 | = 2282833 | 204 (0.970) | intergenic (+32/+107) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||
| * | ? | NC_000913 | = 1689816 | 228 (1.040) | 9 (0.040) | 8/562 | 26.3 | 3.9% | intergenic (+65/‑36) | manA/ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| ? | NC_000913 | = 1689821 | 222 (1.040) | intergenic (+70/‑31) | manA/ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein | |||||
| * | ? | NC_000913 | 4542682 = | 260 (1.190) | 7 (0.030) | 7/560 | 27.0 | 2.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 238 (1.120) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 998447 | 250 (1.140) | 8 (0.040) | 7/560 | 27.0 | 3.2% | intergenic (+40/‑43) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| ? | NC_000913 | = 998451 | 246 (1.160) | intergenic (+44/‑39) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone | |||||
| * | ? | NC_000913 | = 2408797 | NA (NA) | 6 (0.030) | 6/562 | 27.9 | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 2408804 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||