mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 34,111 | 1 | .→T | 2.6% | 10.5 ‑0.5 ‑0.2 | 154 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/cai operon transcriptional activator |
| * | NC_000913 | 2,764,873 | 4 | .→A | 1.5% | 2.4 0.0 ‑0.6 | 134 | coding (281/1617 nt) | yfjL | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
| * | NC_000913 | 2,764,873 | 1 | .→T | 1.5% | 2.2 0.0 ‑0.5 | 134 | coding (281/1617 nt) | yfjL | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
| * | NC_000913 | 2,764,873 | 2 | .→T | 1.5% | 2.2 0.0 ‑0.6 | 134 | coding (281/1617 nt) | yfjL | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
| * | NC_000913 | 2,764,873 | 5 | .→T | 1.5% | 1.9 0.0 ‑0.5 | 134 | coding (281/1617 nt) | yfjL | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
| * | NC_000913 | 2,859,548 | 2 | .→G | 1.5% | 1.9 0.0 ‑0.4 | 132 | coding (2456/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 3,143,911 | 1 | .→G | 1.4% | 1.8 0.0 ‑0.6 | 138 | coding (254/1179 nt) | hybB | putative hydrogenase 2 cytochrome b type component |
| * | NC_000913 | 3,583,784 | 0 | C→T | 100.0% | 1.8 | 2 | D36D (GAC→GAT) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,799,252 | 0 | A→G | 100.0% | 1.8 | 1 | F21L (TTC→CTC) | waaU | lipopolysaccharide core biosynthesis |
| * | NC_000913 | 3,890,267 | 1 | .→A | 1.5% | 1.8 0.0 ‑0.1 | 135 | coding (32/1248 nt) | tnaB | tryptophan transporter of low affinity |
| * | NC_000913 | 2,100,508 | 1 | .→G | 1.4% | 1.6 0.0 ‑0.3 | 141 | coding (761/1407 nt) | gnd | 6‑phosphogluconate dehydrogenase, decarboxylating |
| * | NC_000913 | 3,583,787 | 0 | C→G | 100.0% | 1.6 | 2 | V37V (GTC→GTG) | insB1 | IS1 transposase B |
| * | NC_000913 | 2,427,414 | 1 | .→G | 1.3% | 1.5 0.0 ‑0.4 | 156 | coding (378/783 nt) | argT | lysine/arginine/ornithine transporter subunit |
| * | NC_000913 | 3,426,574 | 0 | G→T | 100.0% | 1.5 | 4 | noncoding (210/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,472,468 | 2 | .→C | 1.4% | 1.5 0.0 ‑0.3 | 138 | coding (1047/2115 nt) | fusA | protein chain elongation factor EF‑G, GTP‑binding |
| * | NC_000913 | 3,583,772 | 0 | G→A | 100.0% | 1.4 | 2 | Q32Q (CAG→CAA) | insB1 | IS1 transposase B |
| * | NC_000913 | 4,312,758 | 1 | .→T | 1.4% | 1.3 0.0 ‑0.0 | 139 | coding (234/891 nt) | alsR | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| * | NC_000913 | 2,514,551 | 0 | A→T | 100.0% | 1.2 | 1 | D74V (GAC→GTC) | insL1 | IS186 transposase |
| * | NC_000913 | 2,764,873 | 3 | .→G | 1.5% | 1.2 0.0 ‑0.2 | 134 | coding (281/1617 nt) | yfjL | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
| * | NC_000913 | 4,038,402 | 0 | T→G | 100.0% | 1.2 | 1 | noncoding (884/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 3,424,188 | 0 | A→C | 100.0% | 1.1 | 1 | noncoding (2596/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,130,429 | 0 | G→C | 100.0% | 1.0 | 1 | L84L (CTG→CTC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,424,237 | 0 | C→A | 100.0% | 1.0 | 1 | noncoding (2547/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,653,742 | 0 | G→T | 100.0% | 1.0 | 1 | intergenic (+29/‑219) | yhiS/slp | pseudogene/outer membrane lipoprotein |
| * | NC_000913 | 1,633,354 | 0 | C→A | 100.0% | 0.9 | 2 | intergenic (+49/‑268) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 1,633,359 | 0 | C→A | 100.0% | 0.9 | 2 | intergenic (+54/‑263) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 2,243,469 | 2 | .→A | 1.4% | 0.8 0.0 ‑0.0 | 141 | coding (184/669 nt) | folE | GTP cyclohydrolase I |
| * | NC_000913 | 3,424,163 | 0 | C→T | 100.0% | 0.8 | 1 | noncoding (2621/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,214 | 0 | C→T | 100.0% | 0.8 | 1 | noncoding (2570/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,426,563 | 0 | T→G | 100.0% | 0.8 | 1 | noncoding (221/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,426,567 | 0 | T→G | 100.0% | 0.8 | 1 | noncoding (217/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,121 | 0 | C→T | 100.0% | 0.7 | 1 | noncoding (2663/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,203 | 0 | C→T | 100.0% | 0.7 | 1 | noncoding (2581/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,472,468 | 1 | .→A | 1.4% | 0.7 0.0 ‑0.1 | 138 | coding (1047/2115 nt) | fusA | protein chain elongation factor EF‑G, GTP‑binding |
| * | NC_000913 | 382,305 | 0 | T→G | 100.0% | 0.6 | 3 | F211C (TTC→TGC) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 2,514,547 | 0 | T→G | 100.0% | 0.6 | 1 | S73A (TCT→GCT) | insL1 | IS186 transposase |
| * | NC_000913 | 4,391,438 | 1 | .→G | 1.4% | 0.5 0.0 ‑0.2 | 144 | coding (72/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | NC_000913 | 4,254,556 | 2 | .→C | 1.4% | 0.4 0.0 ‑0.1 | 144 | coding (1911/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| * | NC_000913 | 4,254,556 | 1 | .→A | 1.4% | 0.3 0.0 ‑0.1 | 144 | coding (1911/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| * | NC_000913 | 2,243,469 | 1 | .→C | 1.4% | 0.2 0.0 ‑0.1 | 141 | coding (184/669 nt) | folE | GTP cyclohydrolase I |
| * | NC_000913 | 2,760,580 | 0 | T→A | 1.6% | 0.1 0.0 ‑0.1 | 189 | S12T (TCC→ACC) | yfjJ | CP4‑57 prophage; uncharacterized protein |