mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 318 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 354,288 | 0 | T | G | 56.8% | 38.1 / 56.9 | 44 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 501,575 | 0 | A | C | 53.8% | 47.8 / 63.4 | 39 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 354,282 | 0 | T | G | 53.5% | 40.3 / 52.3 | 44 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 4,378,802 | 0 | A | C | 53.3% | 30.6 / 41.8 | 30 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 987,494 | 0 | T | G | 52.8% | 29.8 / 51.1 | 36 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 1,622,816 | 0 | G | A | 51.8% | 11.0 / 79.9 | 54 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 1,079,468 | 0 | A | G | 50.9% | 58.3 / 81.0 | 53 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 2,511,772 | 0 | A | C | 50.0% | 111.6 / 18.6 | 74 | V312G (GTG→GGG) | mntH | manganese/divalent cation transporter |
| * | NC_000913 | 366,526 | 0 | T | G | 48.3% | 86.3 / 20.6 | 59 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 3,029,965 | 0 | A | C | 48.1% | 64.7 / 20.1 | 52 | L323V (TTA→GTA) | ygfT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
| * | NC_000913 | 3,443,277 | 0 | A | C | 47.8% | 107.3 / 20.4 | 69 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 2,984,441 | 0 | A | C | 47.5% | 96.7 / 13.2 | 60 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 47.0% | 92.2 / 23.2 | 66 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 1,487,163 | 0 | C | T | 46.5% | 50.0 / 13.7 | 43 | intergenic (+200/‑72) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| * | NC_000913 | 436,504 | 0 | A | C | 46.5% | 101.7 / 25.9 | 71 | T291P (ACC→CCC) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 599,576 | 0 | T | G | 45.8% | 115.6 / 25.9 | 72 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,921,177 | 0 | A | C | 45.6% | 95.4 / 12.4 | 57 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 941,713 | 0 | T | G | 44.8% | 107.7 / 19.8 | 67 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 436,516 | 0 | C | A | 43.9% | 78.9 / 27.8 | 66 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 2,921,173 | 0 | T | C | 43.9% | 77.3 / 18.6 | 57 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 60 (0.970) | 12 (0.220) | 12/266 | 6.2 | 19.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 49 (0.880) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 58 (0.930) | 9 (0.160) | 9/266 | 7.6 | 14.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 51 (0.920) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||