mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 430 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 57.8% | 4.9 / 52.1 | 45 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,376,505 | 0 | A | C | 52.6% | 67.1 / 97.7 | 57 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 436,516 | 0 | C | A | 48.5% | 71.7 / 37.3 | 66 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 357,880 | 0 | T | C | 47.9% | 48.3 / 21.5 | 48 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,825,061 | 0 | G | A | 46.2% | 87.0 / 52.2 | 80 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 1,825,056 | 0 | G | A | 44.7% | 92.7 / 39.9 | 76 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 2,326,450 | 0 | T | G | 44.6% | 108.3 / 13.3 | 65 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 689,514 | 0 | A | C | 44.4% | 109.1 / 16.9 | 73 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 3,177,748 | 0 | C | A | 44.4% | 84.6 / 48.2 | 72 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 43.6% | 130.0 / 32.6 | 78 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 29,486 | 0 | C | A | 42.4% | 104.6 / 39.1 | 66 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 3,131,440 | 0 | T | C | 41.4% | 94.9 / 14.5 | 58 | G323G (GGA→GGG) | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 3,671,415 | 0 | C | T | 41.4% | 81.7 / 29.6 | 58 | K160K (AAG→AAA) | yhjB | putative DNA‑binding transcriptional response regulator |
| * | NC_000913 | 2,846,674 | 0 | T | G | 41.2% | 98.3 / 19.2 | 68 | T247P (ACC→CCC) | hycD | hydrogenase 3, membrane subunit |
| * | NC_000913 | 2,921,177 | 0 | A | C | 41.2% | 130.5 / 11.8 | 68 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.2% | 94.0 / 30.3 | 68 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,120,368 | 0 | T | G | 40.6% | 109.9 / 15.8 | 64 | E73D (GAA→GAC) | solA | N‑methyltryptophan oxidase, FAD‑binding |
| * | NC_000913 | 1,079,468 | 0 | A | G | 40.4% | 76.5 / 15.2 | 52 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 213,341 | 0 | A | G | 40.3% | 129.6 / 15.8 | 72 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 1,506,020 | 0 | C | A | 40.0% | 122.6 / 24.5 | 65 | G21C (GGC→TGC) | ydcO | BenE family inner membrane putative transporter |