mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 456 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 48.6% | 36.4 / 12.8 | 35 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,890 | 0 | C | A | 48.5% | 16.2 / 19.4 | 33 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,231,094 | 0 | T | C | 48.1% | 57.1 / 17.3 | 52 | F736S (TTC→TCC) | ygjK | alpha‑glucosidase |
| * | NC_000913 | 4,378,802 | 0 | A | C | 47.5% | 80.7 / 22.3 | 61 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 1,489,174 | 0 | G | T | 46.8% | 87.4 / 29.3 | 62 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A, NAD‑linked |
| * | NC_000913 | 17,050 | 0 | A | C | 45.8% | 110.6 / 13.8 | 75 | intergenic (‑90/‑439) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| * | NC_000913 | 753,125 | 0 | T | A | 45.3% | 76.1 / 49.5 | 75 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 2,678,043 | 0 | C | T | 45.3% | 67.3 / 35.4 | 64 | E107K (GAA→AAA) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 45.2% | 68.1 / 55.0 | 73 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 4,112,586 | 0 | C | G | 44.7% | 73.4 / 17.3 | 47 | A91G (GCG→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 4,538,109 | 0 | A | C | 44.4% | 105.7 / 17.2 | 72 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 4,042,993 | 0 | C | T | 43.8% | 22.2 / 10.6 | 32 | F193F (TTC→TTT) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| * | NC_000913 | 2,678,039 | 0 | T | G | 43.5% | 96.9 / 15.7 | 62 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 646,747 | 0 | T | G | 43.5% | 101.2 / 29.1 | 70 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 3,705,661 | 0 | T | C | 43.3% | 86.7 / 12.5 | 60 | I44V (ATC→GTC) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 4,604,344 | 0 | C | T | 43.3% | 73.5 / 33.3 | 67 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 4,112,578 | 0 | T | G | 43.2% | 63.0 / 11.3 | 46 | G88G (GGT→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 1,604,237 | 0 | C | T | 43.1% | 57.2 / 28.6 | 58 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 2,851,654 | 0 | T | G | 42.9% | 109.9 / 19.8 | 70 | G218G (GGT→GGG) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
| * | NC_000913 | 3,270,455 | 0 | G | T | 42.9% | 66.5 / 29.1 | 56 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |