mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 56.1% | 8.3 / 46.8 | 41 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,376,505 | 0 | A | C | 50.0% | 49.3 / 13.6 | 42 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 436,516 | 0 | C | A | 48.7% | 39.2 / 16.8 | 39 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 46.5% | 53.0 / 16.4 | 45 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 298,960 | 0 | A | C | 46.2% | 28.5 / 10.5 | 26 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 941,713 | 0 | T | G | 46.2% | 46.9 / 17.1 | 39 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,813,272 | 0 | C | T | 45.7% | 24.9 / 16.3 | 35 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 646,747 | 0 | T | G | 45.2% | 52.7 / 12.1 | 42 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 29,496 | 0 | T | A | 44.7% | 55.4 / 21.0 | 47 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 29,486 | 0 | C | A | 44.4% | 62.6 / 22.9 | 45 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 718,669 | 0 | C | T | 44.4% | 38.8 / 17.4 | 36 | E598K (GAA→AAA) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 1,079,468 | 0 | A | G | 43.9% | 53.2 / 12.9 | 43 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 4,571,384 | 0 | T | A | 43.8% | 37.4 / 12.7 | 33 | Y64F (TAT→TTT) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| * | NC_000913 | 4,538,117 | 0 | T | C | 43.5% | 50.6 / 15.2 | 46 | N217D (AAT→GAT) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 4,536,197 | 0 | A | T | 43.2% | 44.1 / 35.8 | 44 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 3,665,702 | 0 | C | A | 42.5% | 62.5 / 20.4 | 47 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 2,151,611 | 0 | G | A | 41.9% | 30.1 / 10.6 | 31 | E143K (GAA→AAA) | yegJ | uncharacterized protein |
| * | NC_000913 | 4,536,212 | 0 | T | A | 41.9% | 62.1 / 16.3 | 43 | intergenic (+181/+402) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 4,622,250 | 0 | A | G | 41.9% | 54.1 / 12.5 | 45 | E161G (GAG→GGG) | yjjJ | putative protein kinase |
| * | NC_000913 | 1,487,163 | 0 | C | T | 41.7% | 45.0 / 13.7 | 37 | intergenic (+200/‑72) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |