mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 379 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,434,882 | 0 | T | G | 48.4% | 93.5 / 14.6 | 63 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,248,424 | 0 | C | A | 48.0% | 65.4 / 31.1 | 51 | V37F (GTT→TTT) | lysP | lysine transporter |
| * | NC_000913 | 1,036,906 | 0 | T | A | 47.4% | 64.9 / 33.6 | 57 | L53* (TTA→TAA) | hyaF | hydrogenase‑1 protein nickel incorporation factor |
| * | NC_000913 | 2,434,861 | 0 | G | T | 46.9% | 46.6 / 32.1 | 49 | P259Q (CCA→CAA) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 3,743,657 | 0 | A | C | 45.8% | 68.4 / 18.6 | 49 | T309P (ACC→CCC) | yiaK | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
| * | NC_000913 | 3,261,055 | 0 | A | C | 45.7% | 114.2 / 14.5 | 71 | V455G (GTG→GGG) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 45.1% | 83.2 / 12.1 | 52 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,079,468 | 0 | A | G | 44.9% | 65.3 / 17.3 | 50 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 802,118 | 0 | A | C | 43.3% | 105.8 / 11.7 | 61 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 3,177,748 | 0 | C | A | 43.3% | 70.2 / 32.2 | 60 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.9% | 115.6 / 24.6 | 70 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,508,657 | 0 | A | G | 42.9% | 64.0 / 11.0 | 49 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 3,206,435 | 0 | C | T | 42.3% | 48.9 / 34.6 | 53 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 213,341 | 0 | A | G | 42.1% | 80.6 / 19.7 | 57 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 589,934 | 0 | T | G | 42.0% | 88.6 / 12.6 | 50 | T341P (ACC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | NC_000913 | 3,598,973 | 0 | A | T | 41.9% | 98.2 / 18.9 | 62 | M229K (ATG→AAG) | livJ | branched‑chain amino acid ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,248,431 | 0 | A | C | 41.8% | 84.7 / 17.0 | 56 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 345,328 | 0 | C | A | 41.7% | 120.5 / 39.0 | 72 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 2,001,911 | 0 | G | A | 41.7% | 81.6 / 41.1 | 73 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 3,508,662 | 0 | T | A | 41.7% | 72.0 / 15.4 | 49 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |