mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 464 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 802,118 | 0 | A | C | 51.0% | 56.5 / 73.8 | 49 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 354,288 | 0 | T | G | 47.6% | 88.4 / 18.7 | 63 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 941,713 | 0 | T | G | 46.9% | 99.6 / 18.0 | 64 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 4,378,802 | 0 | A | C | 46.5% | 64.9 / 10.8 | 44 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 213,341 | 0 | A | G | 46.2% | 85.1 / 30.1 | 65 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 17,000 | 0 | C | T | 44.4% | 66.3 / 24.2 | 54 | intergenic (‑40/‑489) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| * | NC_000913 | 357,890 | 0 | C | A | 44.4% | 61.1 / 20.9 | 46 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,105,483 | 0 | A | C | 44.3% | 119.3 / 11.5 | 70 | T351P (ACC→CCC) | mltC | membrane‑bound lytic murein transglycosylase C |
| * | NC_000913 | 650,464 | 0 | A | T | 44.1% | 81.1 / 29.9 | 59 | R9R (CGT→CGA) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 925,900 | 0 | A | G | 43.3% | 103.5 / 15.0 | 61 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 366,526 | 0 | T | G | 43.3% | 113.9 / 18.8 | 67 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 17,041 | 0 | G | C | 43.1% | 69.9 / 18.6 | 51 | intergenic (‑81/‑448) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| * | NC_000913 | 1,825,056 | 0 | G | A | 43.1% | 73.1 / 33.1 | 58 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 3,206,435 | 0 | C | T | 42.4% | 72.4 / 54.9 | 67 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,270,455 | 0 | G | T | 42.1% | 69.0 / 26.5 | 57 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 2,147,737 | 0 | C | A | 41.9% | 100.2 / 33.1 | 62 | P22T (CCG→ACG) | yegD | Hsp70 chaperone family protein |
| * | NC_000913 | 3,133,302 | 0 | T | G | 41.9% | 127.9 / 19.3 | 75 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |
| * | NC_000913 | 4,336,901 | 0 | T | A | 41.1% | 69.3 / 26.9 | 56 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 501,575 | 0 | A | C | 40.8% | 134.4 / 13.2 | 72 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 3,575,956 | 0 | A | C | 40.8% | 118.3 / 21.3 | 71 | V369G (GTG→GGG) | gntU | gluconate transporter, low affinity GNT 1 system |