mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 362 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 827,507 | 0 | T | G | 56.4% | 29.4 / 50.0 | 39 | D492A (GAC→GCC) | ybhF | putative ABC transporter ATPase |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 26.7 / 13.8 | 32 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,684,749 | 0 | A | C | 48.9% | 48.6 / 13.2 | 48 | D164A (GAC→GCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 357,890 | 0 | C | A | 48.3% | 17.1 / 18.2 | 29 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 48.0% | 38.7 / 32.3 | 50 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,764,785 | 0 | T | A | 47.4% | 31.0 / 23.1 | 38 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 3,947,829 | 0 | G | A | 47.1% | 50.1 / 26.0 | 51 | L47F (CTT→TTT) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 3,947,831 | 0 | T | G | 46.9% | 64.6 / 14.8 | 51 | N46T (AAC→ACC) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 354,288 | 0 | T | G | 46.8% | 61.7 / 20.6 | 47 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 366,526 | 0 | T | G | 45.8% | 59.6 / 21.6 | 49 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 357,875 | 0 | A | T | 45.7% | 34.9 / 20.1 | 35 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 29,496 | 0 | T | A | 44.1% | 78.5 / 32.4 | 59 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 44.1% | 81.9 / 27.8 | 60 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 1,649,295 | 0 | T | G | 43.9% | 62.9 / 10.6 | 41 | intergenic (+254/‑314) | ydfC/dicB | uncharacterized protein, Qin prophage/Qin prophage; cell division inhibition protein |
| * | NC_000913 | 4,630,340 | 0 | A | C | 43.6% | 83.0 / 16.2 | 55 | G61G (GGT→GGG) | ettA | energy‑dependent translational throttle A |
| * | NC_000913 | 1,649,308 | 0 | G | C | 43.6% | 62.1 / 17.9 | 40 | intergenic (+267/‑301) | ydfC/dicB | uncharacterized protein, Qin prophage/Qin prophage; cell division inhibition protein |
| * | NC_000913 | 2,337,723 | 0 | A | C | 43.3% | 91.5 / 22.5 | 60 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 2,252,657 | 0 | C | T | 42.9% | 61.5 / 22.6 | 49 | L320F (CTT→TTT) | yeiI | putative kinase |
| * | NC_000913 | 2,252,646 | 0 | T | G | 42.6% | 79.9 / 15.9 | 55 | V316G (GTA→GGA) | yeiI | putative kinase |
| * | NC_000913 | 1,684,736 | 0 | A | C | 42.5% | 51.8 / 10.5 | 47 | T160P (ACC→CCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |