mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 1034 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 55.7% | 30.1 / 112.4 | 88 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 91.4 / 37.5 | 84 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,875 | 0 | A | T | 47.1% | 106.0 / 53.7 | 87 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,511,923 | 0 | A | C | 46.8% | 134.6 / 10.3 | 79 | V141G (GTT→GGT) | yhfZ | putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 827,507 | 0 | T | G | 46.4% | 184.4 / 30.0 | 110 | D492A (GAC→GCC) | ybhF | putative ABC transporter ATPase |
| * | NC_000913 | 941,713 | 0 | T | G | 46.3% | 127.3 / 47.6 | 95 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 925,900 | 0 | A | G | 45.4% | 150.8 / 29.7 | 97 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 4,332,791 | 0 | A | C | 44.8% | 181.7 / 33.3 | 105 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 689,514 | 0 | A | C | 44.7% | 141.7 / 18.0 | 85 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 43.4% | 194.5 / 23.8 | 107 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,228,275 | 0 | T | C | 43.3% | 101.4 / 16.9 | 99 | pseudogene (335/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 599,576 | 0 | T | G | 43.0% | 186.3 / 40.2 | 108 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 993,917 | 0 | A | C | 42.9% | 164.1 / 18.9 | 93 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 3,443,277 | 0 | A | C | 42.7% | 216.6 / 50.6 | 124 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 3,026,941 | 0 | A | C | 42.7% | 192.4 / 26.5 | 112 | E392D (GAA→GAC) | guaD | guanine deaminase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 42.6% | 231.0 / 26.7 | 115 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 3,206,435 | 0 | C | T | 42.5% | 106.8 / 62.1 | 94 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 501,575 | 0 | A | C | 42.5% | 221.3 / 24.3 | 113 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 501,564 | 0 | A | C | 42.3% | 210.8 / 31.5 | 111 | *559E (TAA→GAA) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 993,913 | 0 | G | C | 42.3% | 177.8 / 33.2 | 97 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 97 (0.850) | 14 (0.120) +C |
11/296 | 16.7 | 15.2% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097399 | 60 (0.530) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||