mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 123 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,386,862 | 0 | G | A | 71.4% | 29.0 / 26.9 | 42 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 328,803 | 0 | T | G | 64.1% | ‑2.1 / 38.2 | 40 | T178P (ACC→CCC) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 328,807 | 0 | A | T | 62.5% | ‑0.9 / 41.9 | 41 | D176E (GAT→GAA) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 1,356,201 | 0 | T | G | 61.9% | 8.2 / 20.5 | 21 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,131,430 | 0 | G | A | 60.0% | 5.3 / 21.7 | 20 | L327L (CTG→TTG) | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 3,131,440 | 0 | T | C | 60.0% | 9.0 / 21.5 | 20 | G323G (GGA→GGG) | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 75,079 | 0 | C | T | 59.3% | 5.2 / 30.7 | 27 | L134L (CTG→CTA) | thiB | thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,903,692 | 0 | C | A | 57.5% | 27.6 / 59.7 | 40 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 328,791 | 0 | A | G | 57.1% | 11.1 / 38.6 | 42 | S182P (TCC→CCC) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 2,184,646 | 0 | T | C | 56.5% | 13.0 / 27.7 | 23 | E219G (GAA→GGA) | thiM | hydoxyethylthiazole kinase |
| * | NC_000913 | 1,413,735 | 0 | A | T | 56.0% | 12.9 / 34.4 | 25 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 1,079,468 | 0 | A | G | 55.9% | 20.5 / 40.5 | 34 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 3,131,423 | 0 | G | C | 55.6% | 15.1 / 26.0 | 18 | A329G (GCG→GGG) | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 987,494 | 0 | T | G | 54.5% | 17.2 / 30.1 | 22 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 3,578,287 | 0 | T | C | 54.4% | 37.0 / 57.8 | 47 | E147G (GAA→GGA) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| * | NC_000913 | 75,091 | 0 | G | T | 53.8% | 12.4 / 32.6 | 26 | D130E (GAC→GAA) | thiB | thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
| * | NC_000913 | 993,904 | 0 | A | C | 53.8% | 29.7 / 35.5 | 26 | G47G (GGT→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 3,578,290 | 0 | A | C | 53.5% | 35.3 / 62.3 | 45 | V146G (GTG→GGG) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| * | NC_000913 | 1,004,625 | 0 | T | G | 53.3% | 36.8 / 45.0 | 30 | L227V (TTG→GTG) | ycbF | putative periplasmic pilin chaperone |
| * | NC_000913 | 3,578,301 | 0 | A | C | 53.1% | 48.2 / 63.9 | 49 | G142G (GGT→GGG) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| Marginal new junction evidence (lowest skew 10 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3529405 | 43 (1.060) | 9 (0.240) | 9/278 | 1.9 | 17.5% | coding (58/402 nt) | hslR | ribosome‑associated heat shock protein Hsp15 |
| ? | NC_000913 | = 3529461 | 45 (1.180) | coding (114/402 nt) | hslR | ribosome‑associated heat shock protein Hsp15 | |||||
| * | ? | NC_000913 | 3959502 = | 61 (1.500) | 6 (0.160) | 7/272 | 2.3 | 9.9% | intergenic (+57/+30) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| ? | NC_000913 | 3959529 = | 54 (1.450) | intergenic (+84/+3) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) | |||||
| * | ? | NC_000913 | = 2713829 | 35 (0.860) | 7 (0.190) | 7/276 | 2.3 | 17.2% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 35 (0.930) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 3640591 | 59 (1.450) | 6 (0.170) | 6/254 | 2.4 | 10.6% | intergenic (+46/‑271) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| ? | NC_000913 | = 3640569 | 51 (1.470) | intergenic (+24/‑293) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B | |||||
| * | ? | NC_000913 | 4558975 = | 40 (0.980) | 6 (0.160) | 6/280 | 2.6 | 12.3% | coding (552/1173 nt) | iadA | isoaspartyl dipeptidase |
| ? | NC_000913 | 4559021 = | 48 (1.250) | coding (506/1173 nt) | iadA | isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | 4542682 = | 33 (0.810) | 6 (0.160) | 6/280 | 2.6 | 14.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 41 (1.070) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4409595 | 35 (0.860) | 6 (0.150) | 6/284 | 2.6 | 14.6% | coding (321/732 nt) | rlmB | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4409617 | 37 (0.950) | coding (343/732 nt) | rlmB | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4255890 = | 35 (0.860) | 6 (0.160) | 6/282 | 2.6 | 14.3% | coding (577/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| ? | NC_000913 | 4256077 = | 39 (1.010) | coding (390/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase | |||||
| * | ? | NC_000913 | 3060398 = | 32 (0.790) | 6 (0.160) | 6/282 | 2.6 | 14.8% | coding (646/894 nt) | argP | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| ? | NC_000913 | 3060457 = | 39 (1.010) | coding (705/894 nt) | argP | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor | |||||
| * | ? | NC_000913 | 3037860 = | 36 (0.880) | 6 (0.160) | 6/276 | 2.6 | 14.8% | coding (247/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913 | 3037943 = | 36 (0.950) | coding (164/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||