mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_pgi | 4,296,088 | 0 | C | T | 41.8% | 23.0 / 71.3 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_pgi | 2,947,591 | 0 | A | . | 30.0% | 34.8 / 16.6 | 20 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | NC_000913_3_hsa_pgi | 526,796 | 0 | C | G | 28.9% | 192.2 / 92.3 | 130 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,792 | 0 | A | C | 26.6% | 171.9 / 72.1 | 129 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,800 | 0 | A | G | 24.2% | 218.1 / 73.3 | 129 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 2,030,179 | 0 | C | T | 21.3% | 145.4 / 32.2 | 76 | A214V (GCG→GTG) | yedA | amino acid exporter for phenylalanine, threonine |
| * | NC_000913_3_hsa_pgi | 1,019,734 | 0 | G | T | 20.6% | 114.1 / 15.0 | 68 | P107Q (CCA→CAA) | ompA | outer membrane protein A (3a;II*;G;d) |
| * | NC_000913_3_hsa_pgi | 380,013 | 0 | G | . | 20.0% | 73.9 / 17.4 | 30 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (lowest skew 10 of 229 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | = 225998 | NA (NA) | 19 (0.210) | 15/288 | 6.3 | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_pgi | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_pgi | 381819 = | NA (NA) | 13 (0.140) | 12/282 | 7.2 | NA | coding (146/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_hsa_pgi | 381841 = | NA (NA) | coding (168/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_hsa_pgi | 225078 = | NA (NA) | 24 (0.270) | 12/282 | 7.2 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_pgi | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_pgi | = 224344 | NA (NA) | 20 (0.210) | 11/290 | 7.7 | NA | noncoding (574/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_pgi | = 224358 | NA (NA) | noncoding (588/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_pgi | 3917461 = | 110 (1.160) | 12 (0.130) | 10/286 | 8.0 | 10.1% | coding (805/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| ? | NC_000913_3_hsa_pgi | 3917489 = | 108 (1.180) | coding (777/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit | |||||
| * | ? | NC_000913_3_hsa_pgi | 2030478 = | 83 (0.870) | 9 (0.100) | 9/280 | 8.3 | 10.1% | coding (441/471 nt) | vsr | DNA mismatch endonuclease of very short patch repair |
| ? | NC_000913_3_hsa_pgi | 2030509 = | 81 (0.900) | coding (410/471 nt) | vsr | DNA mismatch endonuclease of very short patch repair | |||||
| * | ? | NC_000913_3_hsa_pgi | 1120539 = | 93 (0.980) | 9 (0.100) | 9/282 | 8.3 | 9.5% | coding (48/1119 nt) | solA | N‑methyltryptophan oxidase, FAD‑binding |
| ? | NC_000913_3_hsa_pgi | 1120563 = | 83 (0.920) | coding (24/1119 nt) | solA | N‑methyltryptophan oxidase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_pgi | 3920631 = | 136 (1.430) | 9 (0.100) | 9/288 | 8.5 | 6.6% | coding (258/471 nt) | atpF | F0 sector of membrane‑bound ATP synthase, subunit b |
| ? | NC_000913_3_hsa_pgi | 3920668 = | 122 (1.320) | coding (221/471 nt) | atpF | F0 sector of membrane‑bound ATP synthase, subunit b | |||||
| * | ? | NC_000913_3_hsa_pgi | 2728214 = | NA (NA) | 18 (0.190) | 9/288 | 8.5 | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_pgi | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_pgi | = 226729 | 6 (0.060) | 18 (0.190) | 9/288 | 8.5 | 75.5% | noncoding (971/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_pgi | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||