mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_pgi | 4,296,088 | 0 | C | T | 26.3% | 548.4 / 219.6 | 327 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_pgi | 526,792 | 0 | A | C | 22.7% | 589.7 / 167.3 | 253 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,796 | 0 | C | G | 22.6% | 649.7 / 165.0 | 239 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 3,183,345 | 1 | . | T | 21.6% | 729.9 / 274.4 | 269 | intergenic (+22/+468) | zupT/ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| * | NC_000913_3_hsa_pgi | 3,183,350 | 0 | A | . | 20.6% | 800.2 / 205.8 | 281 | intergenic (+27/+463) | zupT/ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| * | NC_000913_3_hsa_pgi | 2,653,367 | 0 | G | A | 20.3% | 448.1 / 99.1 | 202 | intergenic (+28/‑488) | sseA/ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| Marginal new junction evidence (lowest skew 10 of 776 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | 4245126 = | NA (NA) | 285 (1.310) | 43/174 | 8.5 | NA | noncoding (7/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_hsa_pgi | 4245152 = | NA (NA) | noncoding (33/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4219847 | 2796 (11.530) | 262 (1.230) | 39/170 | 9.4 | 9.7% | coding (1252/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913_3_hsa_pgi | = 4219854 | 2425 (11.420) | coding (1259/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4246699 | 2877 (11.870) | 198 (0.860) | 42/184 | 9.8 | 6.6% | intergenic (‑252/‑113) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase |
| ? | NC_000913_3_hsa_pgi | = 4246723 | 2867 (12.470) | intergenic (‑276/‑89) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase | |||||
| * | ? | NC_000913_3_hsa_pgi | 4240769 = | 3130 (12.910) | 218 (1.000) | 39/174 | 9.8 | 7.2% | intergenic (+6/+38) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913_3_hsa_pgi | 4240797 = | 2772 (12.750) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913_3_hsa_pgi | 4236244 = | 3502 (14.450) | 233 (1.070) | 36/174 | 10.9 | 7.0% | intergenic (+68/‑46) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| ? | NC_000913_3_hsa_pgi | 4236268 = | 3017 (13.880) | intergenic (+92/‑22) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4254028 | NA (NA) | 244 (1.080) | 35/180 | 11.9 | NA | noncoding (100/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_pgi | = 4254058 | NA (NA) | noncoding (130/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4239778 | 3194 (13.180) | 241 (1.120) | 32/172 | 12.2 | 7.9% | intergenic (+20/+27) | yjbH/yjbT | DUF940 family extracellular polysaccharide protein/putative periplasmic protein |
| ? | NC_000913_3_hsa_pgi | = 4239788 | 2806 (13.060) | intergenic (+30/+17) | yjbH/yjbT | DUF940 family extracellular polysaccharide protein/putative periplasmic protein | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4226596 | 3164 (13.050) | 185 (0.820) | 34/180 | 12.3 | 6.1% | coding (2769/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913_3_hsa_pgi | = 4226613 | 2722 (12.100) | coding (2786/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4251286 | 3137 (12.940) | 172 (0.770) | 33/178 | 12.4 | 5.7% | pseudogene (298/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913_3_hsa_pgi | = 4251294 | 2866 (12.890) | pseudogene (306/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4240778 | 3197 (13.190) | 239 (1.100) | 32/174 | 12.4 | 7.8% | intergenic (+15/+29) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913_3_hsa_pgi | = 4240786 | 2773 (12.750) | intergenic (+23/+21) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||