mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3423823 = | NA (NA) | 11 (0.190) | 9/270 | 6.0 | 15.8% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_hsa_tpiA | = 3946688 | 61 (1.010) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2726200 = | NA (NA) | 11 (0.190) | 9/270 | 6.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228744 | 41 (0.680) | 11 (0.190) | 9/270 | 6.0 | 21.9% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1611571 = | 45 (0.750) | 6 (0.100) | 6/274 | 7.5 | 9.9% | coding (284/948 nt) | yneF | putative membrane‑bound diguanylate cyclase |
| ? | NC_000913_3_hsa_tpiA | 1611609 = | 66 (1.130) | coding (246/948 nt) | yneF | putative membrane‑bound diguanylate cyclase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4385328 | 68 (1.130) | 6 (0.100) | 6/280 | 7.6 | 8.2% | intergenic (+5/‑47) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 4385357 | 66 (1.100) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2291160 | 66 (1.100) | 5 (0.090) | 5/264 | 7.8 | 7.6% | noncoding (8/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | = 2291167 | 60 (1.060) | noncoding (15/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | 349605 = | NA (NA) | 5 (0.090) | 5/268 | 7.9 | NA | noncoding (1/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 349637 = | NA (NA) | noncoding (33/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1715908 = | 53 (0.880) | 4 (0.070) | 4/260 | 8.3 | 7.9% | intergenic (‑19/+40) | pdxY/tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| ? | NC_000913_3_hsa_tpiA | 1715934 = | 44 (0.790) | intergenic (‑45/+14) | pdxY/tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1963110 = | 64 (1.060) | 4 (0.070) | 4/266 | 8.4 | 6.1% | coding (1941/2079 nt) | flhA | putative flagellar export pore protein |
| ? | NC_000913_3_hsa_tpiA | 1963169 = | 63 (1.110) | coding (1882/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 938046 | 63 (1.050) | 4 (0.070) | 4/264 | 8.4 | 6.5% | coding (53/1344 nt) | rarA | recombination intermediate processing DNA‑dependent ATPase |
| ? | NC_000913_3_hsa_tpiA | = 938052 | 57 (1.010) | coding (59/1344 nt) | rarA | recombination intermediate processing DNA‑dependent ATPase | |||||