mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 36.0% | 96.7 / 89.1 | 100 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 66 (1.020) | 12 (0.210) | 12/250 | 4.9 | 17.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 55 (0.960) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 71 (1.090) | 12 (0.210) | 12/250 | 4.9 | 16.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 59 (1.030) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 36 (0.550) | 10 (0.160) | 10/264 | 5.9 | 19.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 49 (0.810) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 40 (0.620) | 8 (0.130) | 7/264 | 7.2 | 15.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 49 (0.810) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1209618 | 62 (0.960) | 5 (0.090) | 5/252 | 8.0 | 6.6% | pseudogene (2/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| ? | NC_000913_3_pae_tpiA | 2471897 = | 86 (1.480) | pseudogene (226/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 141977 = | NA (NA) | 5 (0.080) | 5/264 | 8.3 | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | NC_000913_3_pae_tpiA | 142000 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | NC_000913_3_pae_tpiA | 984483 = | 69 (1.060) | 5 (0.080) | 5/266 | 8.4 | 7.4% | intergenic (+186/+36) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent |
| ? | NC_000913_3_pae_tpiA | 984503 = | 60 (0.980) | intergenic (+206/+16) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | 3242994 = | 61 (0.940) | 5 (0.080) | 5/274 | 8.6 | 8.0% | coding (321/1488 nt) | uxaA | altronate hydrolase |
| ? | NC_000913_3_pae_tpiA | 3243029 = | 56 (0.890) | coding (286/1488 nt) | uxaA | altronate hydrolase | |||||
| * | ? | NC_000913_3_pae_tpiA | 129366 = | NA (NA) | 4 (0.070) | 4/260 | 8.8 | NA | intergenic (+30/+41) | lpd/yacH | dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase/DUF3300 family protein |
| ? | NC_000913_3_pae_tpiA | 129395 = | NA (NA) | intergenic (+59/+12) | lpd/yacH | dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase/DUF3300 family protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 4056496 = | NA (NA) | 4 (0.070) | 4/262 | 8.9 | 2.6% | noncoding (26/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4056530 = | 152 (2.520) | noncoding (60/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||