mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 23.3% | 55.8 / 20.3 | 44 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 175 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 19 (0.520) | 5 (0.150) | 5/268 | 4.3 | 18.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 25 (0.730) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 3777181 = | 45 (1.230) | 5 (0.150) | 5/268 | 4.3 | 10.4% | intergenic (+154/‑218) | yibL/lldP | ribosome‑associated DUF2810 family protein/L‑lactate permease |
| ? | NC_000913_3_pae_tpiA | 3777204 = | 44 (1.280) | intergenic (+177/‑195) | yibL/lldP | ribosome‑associated DUF2810 family protein/L‑lactate permease | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1552149 | NA (NA) | 5 (0.140) | 5/272 | 4.3 | NA | noncoding (79/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | 2549473 = | NA (NA) | noncoding (8/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3986614 | 35 (0.960) | 4 (0.120) | 4/264 | 4.7 | 10.5% | noncoding (183/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913_3_pae_tpiA | = 3986622 | 36 (1.070) | noncoding (191/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | 4325722 = | NA (NA) | 4 (0.110) | 4/272 | 4.8 | 9.1% | noncoding (5/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4326154 = | 40 (1.150) | noncoding (437/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3115323 | 43 (1.170) | 4 (0.120) | 4/270 | 4.8 | 8.9% | coding (3790/4563 nt) | sslE | putative secreted and surface‑associated lipoprotein mucinase |
| ? | NC_000913_3_pae_tpiA | = 3115328 | 41 (1.190) | coding (3785/4563 nt) | sslE | putative secreted and surface‑associated lipoprotein mucinase | |||||
| * | ? | NC_000913_3_pae_tpiA | 2588975 = | 31 (0.850) | 4 (0.110) | 4/274 | 4.8 | 11.5% | coding (1381/3114 nt) | acrD | aminoglycoside/multidrug efflux system |
| ? | NC_000913_3_pae_tpiA | 2588990 = | 32 (0.910) | coding (1396/3114 nt) | acrD | aminoglycoside/multidrug efflux system | |||||
| * | ? | NC_000913_3_pae_tpiA | 2155287 = | 37 (1.010) | 4 (0.110) | 4/272 | 4.8 | 10.8% | coding (25/3123 nt) | mdtB | multidrug efflux system, subunit B |
| ? | NC_000913_3_pae_tpiA | 2155309 = | 31 (0.890) | coding (47/3123 nt) | mdtB | multidrug efflux system, subunit B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1826225 | 26 (0.710) | 4 (0.110) | 4/272 | 4.8 | 13.4% | coding (699/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913_3_pae_tpiA | = 1826230 | 27 (0.780) | coding (694/969 nt) | astE | succinylglutamate desuccinylase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1552327 | NA (NA) | 4 (0.110) | 4/272 | 4.8 | NA | noncoding (79/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | 2549473 = | NA (NA) | noncoding (8/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||