Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I1 R1
|
58 |
75.1 |
3211970 |
98.6% |
3167002 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
2,017,254 |
(G)9→8 |
intergenic (‑862/‑1472) |
PP_1795 ← / → PP_1797 |
hypothetical protein/HlyD family secretion protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 2,017,246 | 0 | G | . | 98.8%
| 362.7
/ ‑3.0
| 80 | intergenic (‑854/‑1480) | PP_1795/PP_1797 | hypothetical protein/HlyD family secretion protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base . (40/39); total (40/40) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTT > NC_002947_CJ‑RC/2017100‑2017390
|
tGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggg > 6:353271/1‑149 (MQ=255)
aTTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggggggg > 2:45074/1‑149 (MQ=255)
aTTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggggggg > 2:171708/1‑149 (MQ=255)
aTTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggggggg > 5:110648/1‑149 (MQ=255)
tGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggggggggc > 6:277992/1‑148 (MQ=255)
gATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGTGTCGGGCGCGGATCATGGTGCGTATAAGCAATAGGTTATATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTgggggggtc < 6:7198/148‑3 (MQ=255)
tGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCt > 1:171898/1‑149 (MQ=255)
gTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACgtc < 4:73856/149‑3 (MQ=255)
gTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGgc > 3:5025/1‑149 (MQ=255)
tCCTGTTGCTGACGCTTGGATCCCTCGAATGGGGTCGGTCGCGGTTCATGGTGCGTATAAGCAATAGGTTAGTTGTGCTGTTGAGCAGGGATGAGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑TGGGGGGGCGATGCTACGgcg < 8:343393/149‑1 (MQ=255)
tCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGgcg < 1:362000/149‑1 (MQ=255)
ccTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACAGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGgcg > 1:189299/1‑148 (MQ=255)
cTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCa < 7:600/149‑1 (MQ=255)
tGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAg > 3:96067/1‑149 (MQ=255)
gCTGACGCTAGGCTCCCTCGAATGGCTTCGGTCGCGGATCATGCTGCGTATATGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCACCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGt > 3:355606/1‑149 (MQ=255)
tGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGAAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGATTCAAGCGATCGCTACAGAGT‑GGCGGGGGCGATGCTACGGCGCAGTCGtt > 7:79198/1‑148 (MQ=255)
aCGCTAGGCTCCCTCGAAGGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGa < 5:241318/148‑1 (MQ=255)
tAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGt < 6:137599/141‑1 (MQ=255)
tAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGAc > 6:223502/1‑149 (MQ=255)
tAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGATTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGt > 5:137599/1‑141 (MQ=255)
gCTCCCTCGTATGGGTTCGGTGGCGGATGATGGGGCGTATATGCAATAGGTTAGATGTGCTGTTGAGCAGGCATGTGTACCGAGCCTGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCt < 1:362400/148‑1 (MQ=255)
gCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTa < 8:179326/149‑1 (MQ=255)
tCCCTCGAATGGGTTCGTTCGCGGATAATGGTGGTTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGTTGTGTACCGAGGCAGCTTCTAGCGATCGCTTCTGTGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGTATTTCCTAAc < 4:5056/149‑1 (MQ=255)
tCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAAc > 2:372014/1‑149 (MQ=255)
cTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTc > 8:132603/1‑149 (MQ=255)
gAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCt > 8:219072/1‑148 (MQ=255)
aTGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTAc < 8:219977/149‑1 (MQ=255)
gTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGa > 2:192765/1‑147 (MQ=255)
cGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAATGGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGt < 2:4349/148‑1 (MQ=255)
ggTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGttt < 8:39292/149‑1 (MQ=255)
ggTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGttt > 6:380730/1‑149 (MQ=255)
tCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGttttt > 1:91821/1‑149 (MQ=255)
gcgGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGCCGATGCTACGGCGCAGACGTTGAATGACCTAACGTCCTTACGACAGTTTTGCa > 4:200108/1‑149 (MQ=255)
cgGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCAc < 4:96067/149‑1 (MQ=255)
ggATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTTAATGACCTAAAGTCCTTACGACATTTTTTCACg > 2:103465/1‑149 (MQ=255)
ggATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACg > 2:109373/1‑149 (MQ=255)
gATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACgg > 6:157400/1‑149 (MQ=255)
aTCAAGGAGCGTATAACCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGAGATGCAACCGCGCAGTCGTTCAATGACCTAACGTCCTTACGACAGTTATTCACgg > 4:97570/1‑148 (MQ=255)
cATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAg > 4:151326/1‑149 (MQ=255)
gTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCggg < 7:310897/149‑1 (MQ=255)
tGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGc < 3:151326/149‑1 (MQ=255)
tGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGc < 7:219072/149‑1 (MQ=255)
tataAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCgt‑gt < 5:292157/149‑1 (MQ=255)
taAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTc < 5:277992/149‑1 (MQ=255)
aGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGATTGACCTAACGTCGTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCg > 5:117183/1‑148 (MQ=255)
gCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCa > 1:92523/1‑149 (MQ=255)
gCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCa > 5:317561/1‑149 (MQ=255)
ggTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCAttttt < 3:151551/148‑1 (MQ=255)
gTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACTGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTc > 4:162178/1‑148 (MQ=255)
gTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTc < 6:110648/148‑1 (MQ=255)
gTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCg < 5:353271/149‑1 (MQ=255)
aGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGAc < 2:197961/148‑1 (MQ=255)
aGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACg > 1:86040/1‑149 (MQ=255)
tgCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCg > 3:287635/1‑149 (MQ=255)
gCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCATTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGt > 7:253247/1‑149 (MQ=255)
cTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTg < 5:332865/149‑1 (MQ=255)
tGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGTGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTAGCCTTTTTCGACGGTCCGTgg > 2:170398/1‑149 (MQ=255)
gAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTc > 1:284672/1‑149 (MQ=255)
aGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTcc < 1:45074/149‑1 (MQ=255)
gCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTcc > 5:135865/1‑148 (MQ=255)
cAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGTGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCTACGCTCCGTGGTTTACCa > 2:80796/1‑149 (MQ=255)
aGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCTACGCTCCGTGGTTTCCCAt > 6:148388/1‑149 (MQ=255)
aGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCAt < 4:5025/149‑1 (MQ=255)
aGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCAt > 6:372278/1‑149 (MQ=255)
aGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAG‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCAt < 7:56503/149‑1 (MQ=255)
gggATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCAtt > 3:62618/1‑149 (MQ=255)
gggATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCACAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCAtt < 5:268326/149‑1 (MQ=255)
ggATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCAtt > 5:181497/1‑148 (MQ=255)
aTGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGACATTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTAGCATTTTTAGACGCTCCGTGGTTTCCCATTta > 4:232698/1‑148 (MQ=255)
tgtgTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTtata < 6:306115/149‑1 (MQ=255)
tgtgTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTtata < 7:187063/149‑1 (MQ=255)
tcagtACCGAGCCAGCATCAAGCGATCGCATCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGTAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTtata < 1:375586/146‑1 (MQ=255)
gtACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAg < 6:225227/149‑1 (MQ=255)
tACCGAGCGAGGTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAg < 8:79198/148‑1 (MQ=255)
tACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTGGCATTTTTAGACGCTACGTGGTTTCCCATTTATACAg > 5:5263/1‑148 (MQ=255)
tACCGAGCCAGCATCAAGCGTTCGCTTCAGAGT‑GGGGGGTGCGATGCTAAGGCGCAGTAGTTGAATGAACTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTAGACGCTCCGTGGTTTCCCATTTATACAg < 3:97570/148‑1 (MQ=255)
aCCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGCGGTGCGACGGCCCCGTCGTTGAATGGCCGAACCTGCGTACGACAGGTTTTAAAGGGGGCGGGCGTGGTTGGAATTTTTGCAGGGGCGGGGGTTGCCCATTtataattgg > 4:235400/1‑144 (MQ=255)
gAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAgtcgtc < 7:191406/149‑1 (MQ=255)
gAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAgtcgtc < 1:372014/149‑1 (MQ=255)
aGCCAGCTTCAATCGATCGCTTCAGAGT‑GGGGTTGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCTGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCa < 1:103465/149‑1 (MQ=255)
aGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCa < 1:109373/149‑1 (MQ=255)
cAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGt < 5:223502/149‑1 (MQ=255)
gCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTAGACGCTCCGTGGTTTCCCATTTATACAGTAGTCATGtt > 3:273608/1‑148 (MQ=255)
aTCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATtccatc < 5:372278/149‑1 (MQ=255)
agagT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGTATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCAtggttt < 8:253247/149‑1 (MQ=255)
agagT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTACTATTACATCCAtggttt > 5:103000/1‑149 (MQ=255)
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TGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGT‑GTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTT > NC_002947_CJ‑RC/2017100‑2017390
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGA > NC_002947_CJ‑RC/2017111‑2017397
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CTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTT > NB501016:282:H2V7GAFX2:1:11306:8906:2235/1‑151 (MQ=60)
CGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCG > NB501016:282:H2V7GAFX2:2:11101:25017:18367/1‑151 (MQ=60)
GTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGC < NB501016:282:H2V7GAFX2:1:21305:22512:3651/151‑1 (MQ=60)
TCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACAGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGC > NB501016:282:H2V7GAFX2:1:11309:10332:8126/1‑150 (MQ=60)
CCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAG < NB501016:282:H2V7GAFX2:4:11401:3336:3189/151‑1 (MQ=60)
CTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGT > NB501016:282:H2V7GAFX2:2:11206:8599:5503/1‑151 (MQ=60)
TGCTGACGCTAGGCTCCCTCGAATGGCTTCGGTCGCGGATCATGCTGCGTATATGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCACCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTT > NB501016:282:H2V7GAFX2:2:21307:3554:3606/1‑151 (MQ=60)
CTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGAAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGATTCAAGCGATCGCTACAGAGT‑GGCGGGGGCGATGCTACGGCGCAGTCGTTG > NB501016:282:H2V7GAFX2:4:11502:24109:11433/1‑150 (MQ=60)
GACGCTAGGCTCCCTCGAAGGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAA < NB501016:282:H2V7GAFX2:3:21408:5989:2453/150‑1 (MQ=60)
CTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGATTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTT > NB501016:282:H2V7GAFX2:3:11601:3958:12169/1‑143 (MQ=60)
GGCTCCCTCGTATGGGTTCGGTGGCGGATGATGGGGCGTATATGCAATAGGTTAGATGTGCTGTTGAGCAGGCATGTGTACCGAGCCTGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTA < NB501016:282:H2V7GAFX2:1:21305:11978:5027/150‑1 (MQ=60)
GTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTC > NB501016:282:H2V7GAFX2:1:11204:2999:3578/1‑151 (MQ=60)
GGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGC < NB501016:282:H2V7GAFX2:4:21507:18826:3551/151‑1 (MQ=60)
GTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCG < NB501016:282:H2V7GAFX2:4:21403:20571:2783/151‑1 (MQ=60)
GTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCG < NB501016:282:H2V7GAFX2:2:11303:15945:15852/151‑1 (MQ=60)
GTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTT < NB501016:282:H2V7GAFX2:3:21505:14087:13630/151‑1 (MQ=60)
ATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCG < NB501016:282:H2V7GAFX2:3:21503:13911:2823/151‑1 (MQ=60)
AAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGATTGACCTAACGTCGTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGC > NB501016:282:H2V7GAFX2:3:11510:11107:3323/1‑150 (MQ=60)
AGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCAT > NB501016:282:H2V7GAFX2:1:11204:9109:5849/1‑151 (MQ=60)
AGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCAT > NB501016:282:H2V7GAFX2:3:21510:14786:5160/1‑151 (MQ=60)
ATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGACAGCTTCAAGCGATCGCTTCAGAGT‑CGGGGGGGCGATGCTACGCCGCAGTCGTTGAATGACCTAACTTCCTTACtaaagtttttaaaggtcgcgggcggtttcgaattttt > NB501016:282:H2V7GAFX2:3:21612:22808:11829/1‑114 (MQ=60)
AGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTC < NB501016:282:H2V7GAFX2:2:11303:19892:16609/150‑1 (MQ=60)
GGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGA < NB501016:282:H2V7GAFX2:3:21604:5095:6209/151‑1 (MQ=60)
TAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGC > NB501016:282:H2V7GAFX2:1:11203:17690:4330/1‑151 (MQ=60)
GTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCATTTTTAGACGCTCCGT > NB501016:282:H2V7GAFX2:2:21206:14199:7542/1‑151 (MQ=60)
TGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCATTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTG > NB501016:282:H2V7GAFX2:4:21409:8973:2843/1‑151 (MQ=60)
GCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGG < NB501016:282:H2V7GAFX2:3:21512:25029:18348/151‑1 (MQ=60)
TGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCC > NB501016:282:H2V7GAFX2:1:21202:2225:11116/1‑151 (MQ=60)
GAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCC < NB501016:282:H2V7GAFX2:1:11108:2403:7023/151‑1 (MQ=60)
gccccaggctgttgtccccgcccacctccaacctacgcctcctccGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCACATTTTTCGACGCTCCGTGGTTTCC < NB501016:282:H2V7GAFX2:1:21101:6746:13186/105‑1 (MQ=60)
AGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCAAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCC > NB501016:282:H2V7GAFX2:3:11601:12768:6707/1‑150 (MQ=60)
CAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAG‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATT < NB501016:282:H2V7GAFX2:4:11410:1926:14453/151‑1 (MQ=60)
AGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTAGACGCACCGGGGTTTCCCATTT > NB501016:282:H2V7GAFX2:2:11112:2786:6365/1‑151 (MQ=60)
AGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCACAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTT < NB501016:282:H2V7GAFX2:3:21501:3458:8441/151‑1 (MQ=60)
GGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTT > NB501016:282:H2V7GAFX2:3:11608:20339:16368/1‑150 (MQ=60)
atcaGTACCGAGCCAGCATCAAGCGATCGCATCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGTAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAC < NB501016:282:H2V7GAFX2:1:21307:2747:15393/147‑1 (MQ=60)
ATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAC < NB501016:282:H2V7GAFX2:4:11609:12179:8993/151‑1 (MQ=60)
GTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCATTTTTAGACGCTACGTGGTTTCCCATTTATACAGT > NB501016:282:H2V7GAFX2:3:11401:23018:19728/1‑150 (MQ=60)
GTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTAGACGCTCCGTGGGTTCCCATatttacact > NB501016:282:H2V7GAFX2:1:21208:5106:11970/1‑141 (MQ=60)
GTACCGAGCCAGCATCAAGCGTTCGCTTCAGAGT‑GGGGGGTGCGATGCTAAGGCGCAGTAGTTGAATGAACTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTAGACGCTCCGTGGTTTCCCATTTATACAGT < NB501016:282:H2V7GAFX2:2:11206:1637:10621/150‑1 (MQ=60)
CGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCA < NB501016:282:H2V7GAFX2:1:21307:6642:3236/151‑1 (MQ=60)
CGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCA < NB501016:282:H2V7GAFX2:4:11610:9601:4674/151‑1 (MQ=60)
GAGCCTGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCAT < NB501016:282:H2V7GAFX2:1:11207:26723:2869/151‑1 (MQ=60)
GAGCCAGCTTCAATCGATCGCTTCAGAGT‑GGGGTTGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCTGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCAT < NB501016:282:H2V7GAFX2:1:11206:1096:2885/151‑1 (MQ=60)
CCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTT < NB501016:282:H2V7GAFX2:3:21404:14378:11200/151‑1 (MQ=60)
AGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTAGACGCTCCGTGGTTTCCCATTTATACAGTAGTCATGTTC > NB501016:282:H2V7GAFX2:2:21203:13517:6443/1‑150 (MQ=60)
GATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCC < NB501016:282:H2V7GAFX2:3:21607:11476:10188/151‑1 (MQ=60)
CAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTACTATTACATCCATGGTTTT > NB501016:282:H2V7GAFX2:3:11507:20526:14079/1‑151 (MQ=60)
GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCTTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGA < NB501016:282:H2V7GAFX2:1:11309:16029:20348/151‑1 (MQ=60)
GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGA < NB501016:282:H2V7GAFX2:1:11306:11186:1598/151‑1 (MQ=60)
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CTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGA > NC_002947_CJ‑RC/2017111‑2017397
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
