Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F53 I1 R1
|
62 |
81.2 |
3465250 |
98.6% |
3416736 |
145.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
2,017,254 |
(G)9→8 |
intergenic (‑862/‑1472) |
PP_1795 ← / → PP_1797 |
hypothetical protein/HlyD family secretion protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 2,017,246 | 0 | G | . | 95.3%
| 259.5
/ 6.5
| 65 | intergenic (‑854/‑1480) | PP_1795/PP_1797 | hypothetical protein/HlyD family secretion protein |
| Reads supporting (aligned to +/- strand): ref base G (1/2); new base . (41/20); total (42/23) |
| Fisher's exact test for biased strand distribution p-value = 2.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATC > NC_002947_CJ‑RC/2017099‑2017382
|
cTGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTg < 4:215365/148‑1 (MQ=255)
tGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTgg > 4:170069/1‑148 (MQ=255)
cATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTgggg < 5:250341/147‑1 (MQ=255)
ttGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTGAAGCGATCGCTTCAGAGTggggggg < 8:181401/148‑1 (MQ=255)
ttGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggggggg > 6:76779/1‑148 (MQ=255)
ccTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTggggggggcgat > 7:411236/1‑144 (MQ=255)
tGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGAACATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGCATGTGTACCGAGCCAGCTTCAAGCGAACGCTTGAGAGT‑GGGGGGGGCGATGc > 3:316664/1‑148 (MQ=255)
gTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACgg > 4:81123/1‑148 (MQ=255)
gTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAg > 5:24691/1‑148 (MQ=255)
gTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAg > 6:197197/1‑148 (MQ=255)
cTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGt < 6:151527/148‑1 (MQ=255)
gACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGtt > 3:271247/1‑147 (MQ=255)
aCGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTg > 8:275595/1‑147 (MQ=255)
cGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGTTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGaa > 2:402837/1‑148 (MQ=255)
cGCTAGGCTCCCTCGAATGGGGCCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGaa < 8:64239/148‑1 (MQ=255)
tCGAATGGGTTCGGTCGCGGATCATGGTGAGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTc > 8:362930/1‑148 (MQ=255)
cGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTcc > 6:358628/1‑148 (MQ=255)
aTGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTa < 3:143740/148‑1 (MQ=255)
aTGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTa < 1:158094/148‑1 (MQ=255)
aTGGATTCGGTAGCGGATCATGGTGCGTATAACCAATAGCATAGATGTGCTGTTGAGCAGGGATGTGAAACGAGCCAGCTTCAAGCGAACCCTTCAGAG‑GCGGGGGCGAGATGCTACTGCGCAGTCTATGAATGACCTAACGAccat > 2:402817/1‑145 (MQ=255)
gggTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTAc > 7:76040/1‑147 (MQ=255)
gggTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTAc > 3:412924/1‑147 (MQ=255)
ggTTCTGTCGCGGATCATGGTGCTTATAATCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGATCCAGCTTCAAGCTATCGCTTCAGAGT‑GGGGGTGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACg < 7:198783/147‑1 (MQ=255)
gTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGa > 8:202616/1‑147 (MQ=255)
ttCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGa > 2:9834/1‑146 (MQ=255)
gggTCGCGGTTCATTGTTCGTATAAGCAATAGGTTAGTTGTGCTGTTGAGCAGGGATGTGTAACGATCCATCTTCAAGCGATCGCTTCATAGT‑GGGGGGGTCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAg < 4:281053/146‑1 (MQ=255)
tCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGtttt < 5:67631/148‑1 (MQ=255)
gcgGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTc < 5:392839/148‑1 (MQ=255)
cgGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCa > 8:90920/1‑148 (MQ=255)
cATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACgg > 3:197474/1‑146 (MQ=255)
ggTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCg > 4:143317/1‑148 (MQ=255)
tGCGTATAAGCAATAGGTTCGAGGTGCTGTTGAGCATGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGGGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCg < 2:185659/147‑1 (MQ=255)
gCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGc > 4:189/1‑148 (MQ=255)
tataAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCgtg > 8:298933/1‑148 (MQ=255)
taAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCgtgt < 3:153565/147‑1 (MQ=255)
taAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGtt > 6:17881/1‑148 (MQ=255)
aaGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATTACATAACGTCCTTACGACAGTTTTTCAAGGGAGCGGGCGTGTTc > 7:430395/1‑148 (MQ=255)
aGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGGTGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCg > 6:8744/1‑148 (MQ=255)
atgTTATATGTGCTGTTGAGCAGTGATGTGTACCGAGCCTGATTCAACCGATGGCTTAAGAGT‑GGGGGGGGCGATGCTACGGCGCATTCGTTGATTGACCTAACGTCCTTACGACAGTTTTTCTCGGGAGCGGGCGTGTTCTCAttt < 8:430395/145‑1 (MQ=255)
ttAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTc > 2:254218/1‑147 (MQ=255)
ttAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTAGGAtttttat > 5:327577/1‑146 (MQ=255)
ttAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGATACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTc > 5:365613/1‑147 (MQ=255)
tAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGa > 7:20337/1‑148 (MQ=255)
tAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTAAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGa > 8:143527/1‑148 (MQ=255)
gATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAG‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGAc < 8:411236/147‑1 (MQ=255)
gCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCg > 1:158750/1‑148 (MQ=255)
aGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGATGCTCCGTGGttt < 1:235952/147‑1 (MQ=255)
gCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTcc < 1:254218/148‑1 (MQ=255)
gggATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCAt < 1:242751/148‑1 (MQ=255)
ggATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCAACGCTCCGTGGTTTCCCAtt < 5:39703/148‑1 (MQ=255)
ggATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGACGATGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCAtt > 8:254188/1‑148 (MQ=255)
gATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCAGTTTTAGAAGCTACCTGGTTTACCAtt > 3:413448/1‑147 (MQ=255)
gATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCAtt > 5:70113/1‑147 (MQ=255)
tgtACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCAGGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAc < 5:235374/148‑1 (MQ=255)
tgtACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTtata < 1:402837/147‑1 (MQ=255)
tgtACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTtata > 5:213336/1‑147 (MQ=255)
aCCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAgt < 3:189/148‑1 (MQ=255)
cGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAgtcg < 7:202616/148‑1 (MQ=255)
gAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATTCAgtcgt > 1:46922/1‑148 (MQ=255)
cAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATg > 2:46567/1‑148 (MQ=255)
cAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGGTTGCCATTTATACAGTCGTGATg > 2:142468/1‑148 (MQ=255)
cTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGACCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCACCGTGGTTTCACAATTATACAGTCGTCAAGtt > 6:400033/1‑147 (MQ=255)
tCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTGGGCGCGCCGGGGTTTACCATTTATTCAGTCGTGGTGttggg > 4:10058/1‑145 (MQ=255)
aGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGCCGCTCCGTGGTTTCCCATTTATACAGTCGGCATGTTGCTAt > 2:144774/1‑147 (MQ=255)
aGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTAtt > 8:54077/1‑148 (MQ=255)
aGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTAtt < 7:90920/148‑1 (MQ=255)
aGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTAt > 6:16094/1‑147 (MQ=255)
aGCGATCGCTTCAGAG‑CGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTtat < 1:385275/128‑1 (MQ=255)
gCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGGTCGCATTTTTCGAAGCTCCGTGGTTTCCCAATtata > 2:385275/1‑128 (MQ=255)
aTCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATtccat < 5:76779/148‑1 (MQ=255)
tCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAAAGTCGTCATGTTGCTTTtacata > 4:31366/1‑147 (MQ=255)
|
CTGACATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATC > NC_002947_CJ‑RC/2017099‑2017382
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTG > NC_002947_CJ‑RC/2017108‑2017395
|
ATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATG > NB501016:282:H2V7GAFX2:4:21607:13474:9913/1‑151 (MQ=60)
CCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGAACATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGCATGTGTACCGAGCCAGCTTCAAGCGAACGCTTGAGAGT‑GGGGGGGGCGATGCT > NB501016:282:H2V7GAFX2:2:21207:8774:16759/1‑151 (MQ=60)
CTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGT > NB501016:282:H2V7GAFX2:3:11405:25387:4378/1‑151 (MQ=60)
CTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTG > NB501016:282:H2V7GAFX2:2:21110:8675:3600/1‑150 (MQ=60)
AATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACG < NB501016:282:H2V7GAFX2:1:11301:23546:15121/151‑1 (MQ=60)
AATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACG < NB501016:282:H2V7GAFX2:2:11301:2749:1612/151‑1 (MQ=60)
ATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACG > NB501016:282:H2V7GAFX2:4:11412:24582:17075/1‑150 (MQ=60)
ATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACG > NB501016:282:H2V7GAFX2:2:21312:5205:2987/1‑150 (MQ=60)
GGGTTCTGTCGCGGATCATGGTGCTTATAATCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGATCCAGCTTCAAGCTATCGCTTCAGAGT‑GGGGGTGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGAC < NB501016:282:H2V7GAFX2:4:11608:25202:18386/150‑1 (MQ=60)
GTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTC < NB501016:282:H2V7GAFX2:3:11412:20735:12296/151‑1 (MQ=60)
CGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCAC < NB501016:282:H2V7GAFX2:3:21605:19649:16894/151‑1 (MQ=60)
ATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGG > NB501016:282:H2V7GAFX2:2:11309:4617:10747/1‑149 (MQ=60)
ATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATTACATAACGTCCTTACGACAGTTTTTCAAGGGAGCGGGCGTGTTCG > NB501016:282:H2V7GAFX2:4:21610:19993:13563/1‑151 (MQ=60)
ATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTC < NB501016:282:H2V7GAFX2:2:11302:17252:12613/150‑1 (MQ=60)
AAGCATTAGGTTAGATGTTCTGTTGAGCAGGGTTGTGTACCGAGCCAGCTTCCCGCGAGCGCTTCTGTGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGAGCTAACGTCCTTACGAGAGTTTTTCACGGGAGCGGGCGTGTTCGC < NB501016:282:H2V7GAFX2:1:21305:5657:4995/150‑1 (MQ=60)
GGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTaggatttttatt > NB501016:282:H2V7GAFX2:3:21507:12909:8773/1‑139 (MQ=60)
GGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGATACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCG > NB501016:282:H2V7GAFX2:3:21601:24112:14314/1‑150 (MQ=60)
GTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGAC > NB501016:282:H2V7GAFX2:4:11404:18293:5733/1‑151 (MQ=60)
GTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGT > NB501016:282:H2V7GAFX2:1:11301:2096:17041/1‑151 (MQ=60)
GAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGATGCTCCGTGGTTTCC < NB501016:282:H2V7GAFX2:1:21102:24547:16742/150‑1 (MQ=60)
AGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCA < NB501016:282:H2V7GAFX2:1:21105:6271:14482/151‑1 (MQ=60)
AGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTT < NB501016:282:H2V7GAFX2:1:21103:18136:18030/151‑1 (MQ=60)
GGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCAGTTTTAGAAGCTACCTGGTTTACCATTT > NB501016:282:H2V7GAFX2:2:21312:8726:4543/1‑150 (MQ=60)
GGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTT > NB501016:282:H2V7GAFX2:3:11501:7587:1426/1‑150 (MQ=60)
GGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCAACGCTCCGTGGTTTCCCATTTA < NB501016:282:H2V7GAFX2:3:11407:21483:15666/151‑1 (MQ=60)
TGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAC > NB501016:282:H2V7GAFX2:3:11611:7735:8491/1‑150 (MQ=60)
GTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCAGGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAG < NB501016:282:H2V7GAFX2:3:21403:1442:5705/151‑1 (MQ=60)
GTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACA < NB501016:282:H2V7GAFX2:1:21307:8680:11712/150‑1 (MQ=60)
AACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCG < NB501016:282:H2V7GAFX2:2:11101:17603:1775/151‑1 (MQ=60)
CCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATTCAGTCGTG > NB501016:282:H2V7GAFX2:1:11107:20572:20349/1‑151 (MQ=60)
CCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTC < NB501016:282:H2V7GAFX2:4:11609:2185:11601/151‑1 (MQ=60)
AAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCC < NB501016:282:H2V7GAFX2:4:11503:25264:6452/151‑1 (MQ=60)
AAGCGATCGCTTCAGAG‑CGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAC < NB501016:282:H2V7GAFX2:1:21304:17117:7931/131‑1 (MQ=60)
GATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCC < NB501016:282:H2V7GAFX2:3:11502:21486:2363/151‑1 (MQ=60)
AGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGG < NB501016:282:H2V7GAFX2:4:11605:6544:14374/151‑1 (MQ=60)
gtGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTG < NB501016:282:H2V7GAFX2:2:11212:19279:19450/149‑1 (MQ=60)
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ATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTG > NC_002947_CJ‑RC/2017108‑2017395
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
