Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F14 I0 R1 206 76.7 3255580 98.8% 3216513 146.3

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGATGACGT  >  NC_002947_CJ‑RC/2017107‑2017403
                                                                                                                                                   |                                                                                                                                                     
GATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGAT                                                                                                                                                   >  NB501016:282:H2V7GAFX2:3:11601:7290:4895/1‑151 (MQ=60)
GATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGAT                                                                                                                                                   >  NB501016:282:H2V7GAFX2:3:11408:24104:16172/1‑151 (MQ=60)
         CGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCG                                                                                                                                          <  NB501016:282:H2V7GAFX2:4:11608:11751:11771/151‑1 (MQ=60)
         CGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCG                                                                                                                                          >  NB501016:282:H2V7GAFX2:3:21406:18274:6774/1‑151 (MQ=60)
            CCTGTTGCTGACGCTAGGCTCCCTCGAATTGGTTCGGTCGCGGATCATGGTGCGTAAAAGAAATAGGTTAGATGAGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAG                                                                                                                                       <  NB501016:282:H2V7GAFX2:4:21502:4090:5580/151‑1 (MQ=60)
                  GCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTG                                                                                                                                 <  NB501016:282:H2V7GAFX2:1:21106:15605:6349/151‑1 (MQ=60)
                  GCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTT                                                                                                                                  <  NB501016:282:H2V7GAFX2:1:11109:18234:1581/150‑1 (MQ=60)
                      ACGCTAGGCTCCGTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCTATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTTGTTGAATG                                                                                                                             <  NB501016:282:H2V7GAFX2:2:21306:14617:10033/151‑1 (MQ=60)
                         CTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGATTGAGC                                                                                                                          >  NB501016:282:H2V7GAFX2:4:21608:14928:3560/1‑151 (MQ=60)
                           AGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACC                                                                                                                          <  NB501016:282:H2V7GAFX2:2:21208:11337:10576/149‑1 (MQ=60)
                           AGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACC                                                                                                                          <  NB501016:282:H2V7GAFX2:4:11604:2658:13092/149‑1 (MQ=60)
                              CTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGTGGCGATGCTACGCCGCAGTCTTTGAATGACCTAACC                                                                                                                     >  NB501016:282:H2V7GAFX2:1:11209:3155:11995/1‑151 (MQ=60)
                                     GAATGGGTTCGGGCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTAC                                                                                                              <  NB501016:282:H2V7GAFX2:1:21309:15672:1309/151‑1 (MQ=60)
                                                             GTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTTCTTACGACAGTTTTTCACGGGAGCGGGCG                                                                                      <  NB501016:282:H2V7GAFX2:3:11410:21100:9598/151‑1 (MQ=60)
                                                                     AAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCA                                                                              <  NB501016:282:H2V7GAFX2:2:11208:26047:15968/151‑1 (MQ=60)
                                                                      AGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCAT                                                                             >  NB501016:282:H2V7GAFX2:4:11607:16568:3919/1‑151 (MQ=60)
                                                                                  GATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTAGACGCT                                                                  >  NB501016:282:H2V7GAFX2:2:11105:8552:4224/1‑150 (MQ=60)
                                                                                    TGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCG                                                                       >  NB501016:282:H2V7GAFX2:4:21404:15391:11591/1‑143 (MQ=60)
                                                                                            TGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTC                                                        <  NB501016:282:H2V7GAFX2:1:21208:24053:10503/150‑1 (MQ=60)
                                                                                             GAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCC                                                       <  NB501016:282:H2V7GAFX2:4:11411:24251:8358/150‑1 (MQ=60)
                                                                                                CAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATT                                                   <  NB501016:282:H2V7GAFX2:2:11212:13594:7531/151‑1 (MQ=60)
                                                                                                                   AGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCC                                >  NB501016:282:H2V7GAFX2:4:11409:10039:16337/1‑151 (MQ=60)
                                                                                                                        CAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCGTTACGAGAGTTTTTCACGGGAGCGGGCGTGTTCGCTTTTTTCGACGCTCCGTGGTTTCCCATTTATTCAGTCGTCATGTTCCTATT                            <  NB501016:282:H2V7GAFX2:2:21208:23120:18139/150‑1 (MQ=60)
                                                                                                                        CAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATT                            <  NB501016:282:H2V7GAFX2:4:21605:18593:19724/150‑1 (MQ=60)
                                                                                                                                 GCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGG                  <  NB501016:282:H2V7GAFX2:3:11505:14052:8524/151‑1 (MQ=60)
                                                                                                                                    TCAGAGT‑‑‑‑GGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGG             <  NB501016:282:H2V7GAFX2:3:11405:18435:14215/150‑1 (MQ=60)
                                                                                                                                      AGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTgggatttttgtgagctccgtggttttccatttattaactcgtgatgtttatatttaaaccaatgttttg             >  NB501016:282:H2V7GAFX2:1:21307:20803:7467/1‑82 (MQ=60)
                                                                                                                                      AGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTAGACGCTCCGTGGGTTCCCATTTATACAGTCGTCATGGTGGTATTTCATCCATGGTTTGG             >  NB501016:282:H2V7GAFX2:1:11206:8420:6614/1‑151 (MQ=60)
                                                                                                                                            GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGA        <  NB501016:282:H2V7GAFX2:3:11405:17795:18918/151‑1 (MQ=60)
                                                                                                                                             GGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGAT       <  NB501016:282:H2V7GAFX2:4:21511:5952:9213/151‑1 (MQ=60)
                                                                                                                                                  GGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGATGACGT  <  NB501016:282:H2V7GAFX2:3:11404:9834:3618/151‑1 (MQ=60)
                                                                                                                                                   |                                                                                                                                                     
GATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGATGACGT  >  NC_002947_CJ‑RC/2017107‑2017403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑