Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F13 I0 R1 213 60.4 2554362 98.6% 2518600 147.1

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGT  >  NC_002947_CJ‑RC/2017108‑2017388
                                                                                                                                                   |                                                                                                                                      
ATCCTGACCGTCCTGTTGCTGACGCTATGCTCCCACGAATGGGTTCGGTCGCGGCTCAAGGTGAGTATAAGCAATAGGTTAGAAGTGCTGTAGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGCGGGCGA                                                                                                                                     >  NB501016:282:H2V7GAFX2:1:11208:19444:5442/1‑150 (MQ=60)
      ACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCATAGT‑GGGGGGGGGCGATGCTACG                                                                                                                              <  NB501016:282:H2V7GAFX2:4:21508:22576:5745/151‑1 (MQ=60)
                  CTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGGCGATGCTACGGCGCAGTCGTT                                                                                                                   >  NB501016:282:H2V7GAFX2:3:11506:25897:4131/1‑151 (MQ=60)
                        CTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACC                                                                                                           >  NB501016:282:H2V7GAFX2:2:21108:18851:2868/1‑151 (MQ=60)
                          AGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCT                                                                                                          <  NB501016:282:H2V7GAFX2:1:21210:13818:13254/150‑1 (MQ=60)
                          AGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACC                                                                                                           <  NB501016:282:H2V7GAFX2:4:21404:20081:10950/149‑1 (MQ=60)
                              TCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGT                                                                                                     >  NB501016:282:H2V7GAFX2:3:21501:11579:18016/1‑151 (MQ=60)
                                         GGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACG                                                                                              >  NB501016:282:H2V7GAFX2:1:11205:18839:6785/1‑147 (MQ=60)
                                                                 TATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATTACCTAACGTCCTTATGACAGTTTTTCACGGGAGCGGGCGCGTT                                                                   >  NB501016:282:H2V7GAFX2:3:11404:23878:19386/1‑151 (MQ=60)
                                                                  ATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTG                                                                  >  NB501016:282:H2V7GAFX2:1:21201:12494:18872/1‑151 (MQ=60)
                                                                  ATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTC                                                                  <  NB501016:282:H2V7GAFX2:2:21107:21071:10642/150‑1 (MQ=60)
                                                                                  ATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGCGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTC                                                  <  NB501016:282:H2V7GAFX2:2:11212:12340:16320/151‑1 (MQ=60)
                                                                                   TGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCG                                                >  NB501016:282:H2V7GAFX2:1:11106:16047:14145/1‑151 (MQ=60)
                                                                                    GTGCGGTGGAGCAGGGACGTGTACCGCGCCAGCTGCAAGCGATCGCGGCAGAG‑‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCG                                                <  NB501016:282:H2V7GAFX2:2:21101:22806:13429/150‑1 (MQ=60)
                                                                                         GTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAG‑‑GGGGGGTGGCGATGCTACGGCGCAGTCGTTGAATGTCCTAACGTCCTTACGAGAGTTTTTCACGGGTGCGGGCGTTTTCGCATTTTTCGTCGCTCCGTGGTTT                                          <  NB501016:282:H2V7GAFX2:3:21511:8885:7738/151‑1 (MQ=60)
                                                                                           TGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTC                                         <  NB501016:282:H2V7GAFX2:1:11310:19429:5681/150‑1 (MQ=60)
                                                                                            GACCAGGGAGGGGTACCGAGCCAGCTTCAAGCGCTCGCTTCAGAGG‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCC                                        <  NB501016:282:H2V7GAFX2:1:11210:18863:14769/151‑1 (MQ=60)
                                                                                                      GTGTACCGAGCCAGCTTCACGCGATCGCTCCAGCGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACA                              <  NB501016:282:H2V7GAFX2:3:11508:26406:6979/151‑1 (MQ=60)
                                                                                                          ACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCG                          <  NB501016:282:H2V7GAFX2:4:11610:8607:20267/150‑1 (MQ=60)
                                                                                                              CGCCAGCTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATG                     <  NB501016:282:H2V7GAFX2:4:11511:20796:17764/151‑1 (MQ=60)
                                                                                                                    CTTCAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTGGACGCTCCGTGGTTTCCCATTTATAAAGTCGTCATTTTTCT                >  NB501016:282:H2V7GAFX2:3:21503:11572:16837/1‑150 (MQ=60)
                                                                                                                       CAAGCGATCGCTTCAGAGT‑‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTC            <  NB501016:282:H2V7GAFX2:1:21304:23005:14368/151‑1 (MQ=60)
                                                                                                                          GCGATCGCTTCAGAGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTAC           >  NB501016:282:H2V7GAFX2:4:11606:4807:17614/1‑150 (MQ=60)
                                                                                                                                 CTTCAGAGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGGATTTTTTTAAGCTCCGGGGTTTACCATTTTTACAGTCGggattgttcaattacaagcaagg   >  NB501016:282:H2V7GAFX2:3:21409:24709:17499/1‑128 (MQ=60)
                                                                                                                                 CTTCAGAGT‑‑GGGGGGGGCGATGCTACCGCGCAGTCGTTGAATGACCAAACGTCCTTACGACACTTTTTCACGGGAGCGGGAGTCTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAAACTCGTCATGTTACTATTacaaccaatgt  >  NB501016:282:H2V7GAFX2:4:11406:8011:18943/1‑140 (MQ=60)
                                                                                                                                                   |                                                                                                                                      
ATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGT  >  NC_002947_CJ‑RC/2017108‑2017388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑