Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I0 R1 203 85.6 3649704 98.8% 3605907 146.1

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGATGACGT  >  NC_002947_CJ‑RC/2017104‑2017403
                                                                                                                                                      |                                                                                                                                                     
ATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGC                                                                                                                                                       <  NB501016:282:H2V7GAFX2:2:11310:16318:3602/151‑1 (MQ=60)
   GATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGAT                                                                                                                                                   >  NB501016:282:H2V7GAFX2:3:11405:11165:7006/1‑151 (MQ=60)
   GATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGAT                                                                                                                                                   >  NB501016:282:H2V7GAFX2:2:21203:10293:2218/1‑151 (MQ=60)
       CTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCT                                                                                                                                                >  NB501016:282:H2V7GAFX2:3:21610:18693:14851/1‑150 (MQ=60)
            CGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCG                                                                                                                                          >  NB501016:282:H2V7GAFX2:3:21602:11933:17881/1‑151 (MQ=60)
                  GTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCG                                                                                                                                    >  NB501016:282:H2V7GAFX2:2:21304:26306:9909/1‑151 (MQ=60)
                     GCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTG                                                                                                                                 <  NB501016:282:H2V7GAFX2:3:21502:3719:4044/151‑1 (MQ=60)
                     GCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTCGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTG                                                                                                                                 <  NB501016:282:H2V7GAFX2:2:11303:9361:17113/151‑1 (MQ=60)
                         ACTCTAGTCTCCCTCGAATGTGTTCGGTCGCGGATCATGGTGCGAATAAGCAATAGGTTAGATGTGCTGTTGAGCAGTGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAAT                                                                                                                              <  NB501016:282:H2V7GAFX2:1:11305:24800:2272/150‑1 (MQ=60)
                         ACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGCGGCGATGCTACGGCGCAGTCGTTGAATG                                                                                                                             <  NB501016:282:H2V7GAFX2:4:11603:10956:14620/151‑1 (MQ=60)
                          CGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATG                                                                                                                             >  NB501016:282:H2V7GAFX2:2:11312:14479:9817/1‑150 (MQ=60)
                                   CCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGT                                                                                                                    >  NB501016:282:H2V7GAFX2:4:11601:15689:5536/1‑150 (MQ=60)
                                   CCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACG                                                                                                                     <  NB501016:282:H2V7GAFX2:2:11108:20691:9140/149‑1 (MQ=60)
                                     CTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCT                                                                                                                 >  NB501016:282:H2V7GAFX2:3:21505:3603:15895/1‑151 (MQ=60)
                                        gatatGGTTCGGTCGAGTATCATGGAGCGAATAAGCAATACGATAGAAGAGCTGTTCAGCAGGGATGTGTACCGAGCCACCTTCAAGCGATCCCTTCAGAGT‑GGGGGCGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTAC                                                                                                              <  NB501016:282:H2V7GAFX2:1:11109:25789:1761/146‑1 (MQ=60)
                                        GAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTAC                                                                                                              <  NB501016:282:H2V7GAFX2:1:21307:9451:9013/151‑1 (MQ=60)
                                                       CGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGG                                                                                               <  NB501016:282:H2V7GAFX2:1:11106:5759:14722/151‑1 (MQ=60)
                                                        GGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGG                                                                                              <  NB501016:282:H2V7GAFX2:1:11210:5154:15176/151‑1 (MQ=60)
                                                              TGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGG                                                                                        >  NB501016:282:H2V7GAFX2:1:21109:10035:11114/1‑151 (MQ=60)
                                                                      ATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCG                                                                                <  NB501016:282:H2V7GAFX2:4:21405:5041:10846/151‑1 (MQ=60)
                                                                         AGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGGTCGCAT                                                                             >  NB501016:282:H2V7GAFX2:1:21211:17347:5808/1‑151 (MQ=60)
                                                                               AGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCT                                                                       >  NB501016:282:H2V7GAFX2:3:11411:24533:1178/1‑151 (MQ=60)
                                                                                GGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTagt                                                                      >  NB501016:282:H2V7GAFX2:2:21211:11320:7727/1‑148 (MQ=60)
                                                                                 GTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGATACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGAC                                                                     >  NB501016:282:H2V7GAFX2:4:11607:24033:16654/1‑151 (MQ=60)
                                                                                      ATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAG                                                                                                                                       <  NB501016:282:H2V7GAFX2:1:21108:21169:2826/80‑1 (MQ=60)
                                                                                        GTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTC                                                                                 <  NB501016:282:H2V7GAFX2:3:21510:6676:2533/132‑1 (MQ=60)
                                                                                          GCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGG                                                            <  NB501016:282:H2V7GAFX2:4:21609:26700:7437/151‑1 (MQ=60)
                                                                                                GAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTGCC                                                      >  NB501016:282:H2V7GAFX2:2:11110:15716:8289/1‑151 (MQ=60)
                                                                                                 AGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTAGCATTTTTagcaccgcccgggtttccc                                                      >  NB501016:282:H2V7GAFX2:4:11601:19255:14132/1‑131 (MQ=60)
                                                                                                   CAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTACCATT                                                   >  NB501016:282:H2V7GAFX2:4:21602:17861:1582/1‑151 (MQ=60)
                                                                                                           TGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCC                                                                                                                  <  NB501016:282:H2V7GAFX2:4:21402:3100:14419/80‑1 (MQ=60)
                                                                                                            GTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTC                                          >  NB501016:282:H2V7GAFX2:4:11401:21323:1750/1‑151 (MQ=60)
                                                                                                              ACCGAGCCAGCTTCAAGCGATCGCTTCAGAGT‑AGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCG                                         <  NB501016:282:H2V7GAFX2:3:21407:19479:10938/150‑1 (MQ=60)
                                                                                                                 GAGCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTGAT                                     >  NB501016:282:H2V7GAFX2:1:21206:14867:12069/1‑151 (MQ=60)
                                                                                                                   GCCAGCTTCAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCATTTTTCGACGCTCCGTGGTTTGCCATTTATACAGTCGTGATGT                                   >  NB501016:282:H2V7GAFX2:1:11108:15656:10951/1‑151 (MQ=60)
                                                                                                                           CAAGCGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATT                            >  NB501016:282:H2V7GAFX2:3:11605:20548:12349/1‑150 (MQ=60)
                                                                                                                               CGATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTGATGTTGCTATTgcaac                       >  NB501016:282:H2V7GAFX2:4:11503:14762:12740/1‑146 (MQ=60)
                                                                                                                                CATCGCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCC                      <  NB501016:282:H2V7GAFX2:1:11101:1456:19748/151‑1 (MQ=60)
                                                                                                                                    GCTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTGGCATTTTTAGACGCTCCGTGGTTTTCCATTTATAAAGTCGTCATtttgctattacatgaatgg                  >  NB501016:282:H2V7GAFX2:2:21207:13508:17772/1‑132 (MQ=60)
                                                                                                                                     CTTCAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATAC                                              <  NB501016:282:H2V7GAFX2:2:21308:25853:4608/122‑1 (MQ=60)
                                                                                                                                        CAGAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTG              <  NB501016:282:H2V7GAFX2:4:11405:16616:15348/151‑1 (MQ=60)
                                                                                                                                          GAGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGGCGGTCCGGGGTTTCACCATTATACAGTCGTCctattagaaataaatacaagggttggt            >  NB501016:282:H2V7GAFX2:4:21608:22884:12289/1‑124 (MQ=60)
                                                                                                                                           AGT‑GGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTT           <  NB501016:282:H2V7GAFX2:2:11102:15805:3584/151‑1 (MQ=60)
                                                                                                                                             gtGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTG          <  NB501016:282:H2V7GAFX2:1:11303:8924:8649/149‑1 (MQ=60)
                                                                                                                                             gtGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTG          <  NB501016:282:H2V7GAFX2:2:21108:17509:1452/149‑1 (MQ=60)
                                                                                                                                             gtGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTG          <  NB501016:282:H2V7GAFX2:3:11407:2172:6582/149‑1 (MQ=60)
                                                                                                                                                 GGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGATG      <  NB501016:282:H2V7GAFX2:1:21207:6234:4005/151‑1 (MQ=60)
                                                                                                                                                     GGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTACATCCATGGTTTGGGTGGATGACGT  >  NB501016:282:H2V7GAFX2:3:21609:20126:6891/1‑151 (MQ=60)
                                                                                                                                                      |                                                                                                                                                     
ATTGATCCTGACCGTCCTGTTGCTGACGCTAGGCTCCCTCGAATGGGTTCGGTCGCGGATCATGGTGCGTATAAGCAATAGGTTAGATGTGCTGTTGAGCAGGGATGTGTACCGAGCCAGCTTCAAGCGATCGCTTCAGAGTGGGGGGGGGCGATGCTACGGCGCAGTCGTTGAATGACCTAACGTCCTTACGACAGTTTTTCACGGGAGCGGGCGTGTTCGCATTTTTCGACGCTCCGTGGTTTCCCATTTATACAGTCGTCATGTTCCTATTCCATCCATGGTTTGGTTGGATGACGT  >  NC_002947_CJ‑RC/2017104‑2017403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑