Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F113 I2 R1	11	53.1	1830242	95.2%	1742390	142.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,196,305	C→T	R395C (CGT→TGT)	icd →	isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,196,305	0	C	T	98.3%	154.3 / NA	61	R395C (CGT→TGT)	icd	isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase
Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (38/21); minor base G (0/1); total (39/22)
Fisher's exact test for biased strand distribution p-value = 3.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAGGCTGCTAACGGTT  >  NC_000913/1196167‑1196444

gACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACCTAATTGTTAAAGGTATGGAAGGCGCACTCAACGCGAAAACCGTACCCTATGACTCCGAGCGCCt                                                                                                                                         >  1:533535/1‑143 (MQ=25)

 acgaaGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTGGAGTGCCTg                                                                                                                                        >  1:388633/4‑143 (MQ=255)

  gaaagcacagccTGGCTCTGTTATTCGCGCCGCTGGGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTga                                                                                                                                       <  1:821331/133‑1 (MQ=21)

   aaaGTATTTCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAATGCGAAAACCGTAACCTATGACTTCGAGTGTCTgat                                                                                                                                      <  1:153903/143‑1 (MQ=255)

   aaaGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACGTCGAGTGTCTgat                                                                                                                                      >  2:699829/1‑143 (MQ=255)

   aaaGTAAATCCTGGCTCAATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGCCCGAAGCAGCCACCAAAACTGATAACGGAATGCATGGCGCAATCCACGCGAAAACCGTCACCTCTGACTTCGAGTGTCTgac                                                                                                                                      >  1:192873/1‑142 (MQ=255)

       tAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAGGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTgatggat                                                                                                                                  >  2:91875/1‑143 (MQ=255)

          aTCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAGAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGgc                                                                                                                               >  2:539664/1‑143 (MQ=255)

                  nctATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACAGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAAACAACGCGAANACCGTAACCTAGGACGTCGAGTGACTGAGGGGTGGCGCTaaaaa                                                                                                                       >  1:104849/2‑141 (MQ=21)

                       tattCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAAGTATTGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGa                                                                                                                  <  2:816817/143‑1 (MQ=255)

                        attCTCTCCGCTTGGATGATGCTGCGCCATATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAGCGGTCTCGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGaa                                                                                                                 <  1:795283/143‑1 (MQ=18)

                            tctcCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGCTGGCGCTACACTGCTGAACTGt                                                                                                             >  2:410930/1‑143 (MQ=255)

                            tctcCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGt                                                                                                             >  2:250175/1‑143 (MQ=255)

                                 gCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCaga                                                                                                        <  1:388074/143‑1 (MQ=255)

                                  cTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAAGGTTCagag                                                                                                       >  1:230854/1‑143 (MQ=255)

                                     agaTGATGCTGCGGCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGttt                                                                                                    <  2:554736/143‑1 (MQ=255)

                                         gatgCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTg                                                                                                >  2:229318/1‑143 (MQ=255)

                                              tgcGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGAcgcg                                                                                           >  2:810387/1‑143 (MQ=255)

                                                cgcCACACGGTGTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCGGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGat                                                                                         <  1:363108/143‑1 (MQ=18)

                                                 gcCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGCAATGTTCAGAGTTTGGTGACGCGatc                                                                                        >  2:239585/1‑143 (MQ=255)

                                                  ccACATGCGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGatca                                                                                       <  2:468032/143‑1 (MQ=255)

                                                   cataTGGATTGGACCGAAGCGGCTGACTTAATTGGTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGatcat                                                                                      <  2:143918/140‑1 (MQ=255)

                                                       tGGGTTGGACCGAAGCGGCTGACTTAATTGTTCAATGTATGGAAGGCGCAAGCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCGAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGaa                                                                                  <  1:265157/143‑1 (MQ=18)

                                                        gggTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCggag                                                                                 >  2:132564/1‑140 (MQ=255)

                                                            tGGACCGAAGCGGCAGACTTAATTGTTGGAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACAt                                                                             <  2:164054/143‑1 (MQ=255)

                                                                gcGAAGCAGCTAGCTTAATGGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGGATTCTAGTGTGTGATGGATGGCGCGAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTaa                                                                         <  2:522852/142‑1 (MQ=17)

                                                                 cGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTCAACTGCTGCACTGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAAt                                                                        >  1:199923/1‑143 (MQ=255)

                                                                 cGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAGTGTTCAGAGTTTGGTGACGCGATGATCGCAAATATGTatt                                                                        >  1:637781/1‑141 (MQ=18)

                                                                 cGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAAt                                                                        <  2:848329/143‑1 (MQ=255)

                                                                 cGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGAAGGCGCTACCCCGCAGCATGGGTCAGAGGGTGGTGACGCGATCATCGAACCCATGTact                                                                        >  1:402751/1‑141 (MQ=17)

                                                                   aaGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGc                                                                      >  2:445552/1‑143 (MQ=255)

                                                                        gCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACGTGTAATGCCGTAg                                                                 >  2:85108/1‑143 (MQ=255)

                                                                            aCTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGCTGGATGGCGCTAAACTGCTGAACTGTTGTGTGCCAAGTCACGCGAAAGTCGTAGACGTGTAATGCCGTAGTTTg                                                             >  2:205145/1‑143 (MQ=18)

                                                                              ttAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGACACGTTCCGAGTTTGGTGACGCGATCATCGAAAACGTGTAATGCCGTAGGGTGtt                                                           >  2:249893/1‑143 (MQ=18)

                                                                              ttAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGCAAACATGTAATGCCGTAGTTGGtt                                                           >  1:338720/1‑143 (MQ=255)

                                                                              ttAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGtt                                                           >  2:677727/1‑143 (MQ=255)

                                                                                 aTTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGACATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTCATGCCGTAGGTTGCTaca                                                        >  1:368066/1‑141 (MQ=18)

                                                                                   tGTTACAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAAtt                                                      <  2:354782/143‑1 (MQ=255)

                                                                                   tGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCCAAAACATGTAATGCCGTAGTTTGTTAAAtt                                                      >  2:861908/1‑143 (MQ=255)

                                                                                     ttAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATtta                                                    >  2:378966/1‑143 (MQ=255)

                                                                                      tAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATttat                                                   <  1:250175/143‑1 (MQ=255)

                                                                                       aaaGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATttatt                                                  >  1:460435/1‑143 (MQ=255)

                                                                                            tATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACgg                                             >  2:127571/1‑143 (MQ=255)

                                                                                                gAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGCAATGTTCAGAGTTTGGTGACGCGATAATCGCAAACATGTAATGCCGTAGTTGGTTAAATTTATTAACGGGAGc                                         >  1:44427/1‑143 (MQ=255)

                                                                                                gAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTACCGGGGGc                                         >  2:162621/1‑143 (MQ=255)

                                                                                                      gcAATCAACGCGAAAACCGTAACCTATGACATCGAGTGTCTGATAGATGGCGCTAAACTGCTGAAATATTCAGAGGTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTGGTTACAATTATGAACGGGAGACTAACg                                   >  1:342264/1‑143 (MQ=21)

                                                                                                        aaTCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGGTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTCGATTTATTAACGGGAGCGCAACGCt                                 >  1:836103/1‑143 (MQ=25)

                                                                                                          tCAACGCGAGAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGTGATCGGAACGCTcc                               >  2:809442/1‑143 (MQ=25)

                                                                                                            aaCGCGAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAACCATGTAATGCCGTAGTTTGTTAAATTTATTAACGGTAGCGTGACGCTCCCg                             >  2:506463/1‑143 (MQ=255)

                                                                                                                cgAAAACCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCgttgt                         <  2:509767/143‑1 (MQ=255)

                                                                                                                     aCCGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGtttttt                    <  1:425752/143‑1 (MQ=255)

                                                                                                                     aCCGTAACCTATGACTGCGGGTGGCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGtttttt                    <  1:436594/143‑1 (MQ=255)

                                                                                                                      ccGTAACCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGACATGTTCAGAGTTTGGTGCCGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAAAGGGAGCGTAACGCTCCGCTTGTTTTTTg                   >  2:762650/1‑143 (MQ=25)

                                                                                                                         tAACCTATGACTTCGAGTTTCTGACGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTTACGCTCCCgttaataaatttan                <  2:104849/143‑12 (MQ=25)

                                                                                                                           aCCTATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAgg              <  2:484716/143‑1 (MQ=255)

                                                                                                                              tATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCGGTAGTTTGTTAAATTCCTCAAAGGTAGCGTCACGCTCCCGTTGTTTTTTGTTAGgctg           >  1:189637/1‑143 (MQ=21)

                                                                                                                              tATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCGCGTTGTTTTTTGTTAGgctg           >  2:550751/1‑143 (MQ=255)

                                                                                                                              tATGACTTCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAGgctg           >  1:297090/1‑143 (MQ=255)

                                                                                                                                    ttCGAGTGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAGGCTGCTAACg     >  2:727369/1‑143 (MQ=255)

                                                                                                                                       gAGTGTCTGATGGATGGCGCTAAACTGCGGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTCACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAGGCTGCTAACGGtt  <  2:716979/143‑1 (MQ=255)

                                                                                                                                       gAGGGTCGGATGCAGGGCGCTAAACCGCTGAAATGTTCAGAGTGTGGTTACGCGTTCATCGAGCTCCTGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAGGCTGCTAACGGtt  <  1:684921/143‑1 (MQ=255)

GACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGTTTTTTGTTAGGCTGCTAACGGTT  >  NC_000913/1196167‑1196444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A