Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 142 103.7 2603848 81.8% 2129947 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,196,305 C→T 48.2% R395C (CGT→TGT)  icd → isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,196,3050CT48.2% ‑0.1 / 108.8 97R395C (CGT→TGT) icdisocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase
Reads supporting (aligned to +/- strand):  ref base C (25/22);  new base T (19/21);  total (50/47)
Fisher's exact test for biased strand distribution p-value = 6.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.52e-02

GCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGTCTCCCACAT  >  NC_000913/1196067‑1196539
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
gcAGTTTGGCGTTTTCTTTTTCCCCCCTGTTGCAAACCTCGGGTACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGc                                                                                                                                                                                                                                               <  1:493024/239‑1 (MQ=255)
 cAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGCATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATAACTTAGAGCg                                                                                                                                                                                                                                              >  2:920146/1‑239 (MQ=255)
          tgttttggttgcgacccTGGTGCAAACACCGGGCCCGAAGGCTCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGAGGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑g‑atgga                                                                                                                                                                                                                                   <  1:347148/225‑1 (MQ=37)
            tatcggtatcgCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAACCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTTTTAACGGGATGGAAGG‑GCACAACAACGCGAAAAACGGAACATATAACTTCGAGAGTcgggaggggg                                                                                                                                                                                                                                   >  1:435922/1‑230 (MQ=255)
              tcggtatcgCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGGTGgc                                                                                                                                                                                                                               >  2:236692/1‑239 (MQ=255)
              tcggtatcgCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAACCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATGGTTAAAGGCATGGAAGGGCCA‑ATCAACGCGAAAACCGTAACCTATGACTTCTAGCGTCT‑G‑atggatggg                                                                                                                                                                                                                               >  2:976985/1‑238 (MQ=255)
                      gCCCCTGGTTCAAATATCGGTGACGAAGGGGCCATGTTTGAAGCC‑CCCACGGGTCGGCGCCGAAATAGGCCGGTCAGGAAAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAActg                                                                                                                                                                                                                      <  1:750988/239‑1 (MQ=37)
                            ggggCAAACCTCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGaa                                                                                                                                                                                                                 <  2:771150/236‑1 (MQ=255)
                            ggTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCCCCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGaa                                                                                                                                                                                                                 <  2:872444/239‑1 (MQ=255)
                                cAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGCAAATCCTGGCTCTATTATTCTCCCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTATTTGTTAAAGGGATGGAAAGCGAA‑ATCAACCCGGAAACCGAAACCTTTGACTCCTTGAGTCT‑A‑ATAGATGGGCCAAAAACGCTGaaaatt                                                                                                                                                                                                             >  1:601428/1‑236 (MQ=255)
                                 aaaCTTCGGTGCAGAATGGCCCCTGTTTGAAGCCACCAACGGTACTTGGCCGAAATAAGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCCCTCCGCTGAGAAGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAAGCTAGGACTGCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGtt                                                                                                                                                                                                            <  1:348225/239‑1 (MQ=25)
                                  aaCATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCCCTATTATTCTCTCCGCTGAGATGAGGCTGCGCCACATGGGTTGGTCCGAAGAGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACCCGAGAGCAGTACCCTAGATCATCACGGGTCT‑C‑ATGGGTGGCGCAAAAAGTCTGAAATGTTc                                                                                                                                                                                                           >  1:364539/1‑239 (MQ=255)
                                  aaCATCGGTGACGAATGCGCCCTGTTTGAAACCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGGTGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGGATGGAAGGCGCA‑ATCAACGCGAAAACCCTAACCCCTGACTACGGGCGTCT‑G‑TAGCATGGCGCTAAACGGTTAAAATGTTc                                                                                                                                                                                                           >  1:62282/1‑239 (MQ=255)
                                   aCATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTACGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCa                                                                                                                                                                                                          <  2:211421/239‑1 (MQ=255)
                                       cGGTGACGAATGCGCCCTGTTTGCAACCACCCACGGTACTGCGCCGTAATATGCCGGCCAGGGCAAAGTAAATCCTGGGTCTATTCTTCTCTACGCTGCGATGATATTGGGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGGTAAAGGTAGGGAAGGGGCA‑ATCAACGCAAAAACCGAACCCAATGAAGTCCAGCGTCT‑G‑ACGAATGGCACaaaaaagcttaacattccagaat                                                                                                                                                                                                      >  1:1243574/1‑220 (MQ=255)
                                            aCGAATGCGCCCTGTTTGAAACCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGCTGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCCAAGCGAAAAACGTAACCTATGACTTCGAGCGACT‑G‑AGGGATGGGGCTAAAATGCTGAAAGGTTCAGAGTTTggg                                                                                                                                                                                                 >  1:649206/1‑238 (MQ=255)
                                                 tGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTCAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGCCCGAAACGGCTGGATTAATTGTTACAGGTCTGGAAGGCGCA‑ATCAACGCAAAACCCGTAACCTATGACTTCGGGCGTCT‑G‑ATGGATCTCGCTCAACTCTTGAATTGTTCCGCGTTTGGTGAcgc                                                                                                                                                                                            >  1:63320/1‑239 (MQ=255)
                                                    gcCCTGTTTGAAACCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGAcgcg                                                                                                                                                                                           <  2:746433/237‑1 (MQ=255)
                                                           ttGAAGCCCCCCCCGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCGATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGaa                                                                                                                                                                                  <  2:841921/239‑1 (MQ=255)
                                                                 cccccccaggTTCTGCGCCGAAATATGCCGTTCAGGCCAAAGTAAATCCTGGCTTTATTATTCTCTCCGATAAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATg                                                                                                                                                                            <  1:269056/231‑1 (MQ=21)
                                                                   cactacGGTACTGGCCCGAAATATGCCGGTCAAGACAAAGTAAATCCTGGCTCTATTATTTTTCCCGCTGAGATGATGCTGCCCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTa                                                                                                                                                                          <  2:34977/235‑1 (MQ=21)
                                                                    cccacGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGCAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGCAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTaa                                                                                                                                                                         >  2:98600/1‑239 (MQ=255)
                                                                    cccacGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGCAGGCGCA‑ATCAACGCGAAAACCGGAACCTAGGCCTTCGAGCGTAT‑G‑TGGGATGGAGCTAAACTGTTGAAAGGTTCAGAGTTGGGTGAGGCGACCACCGAAAACAGGTaa                                                                                                                                                                         >  1:612898/1‑239 (MQ=255)
                                                                    cccacGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATTGAGGGCGCTAAACTGCTGAATTGTTCAGAGTTTGTGGAACCGGTCATCGAAAAACTGTaa                                                                                                                                                                         >  2:1193206/1‑239 (MQ=255)
                                                                                cgcCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAAACTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTCAAATGCTGAAATGTTCAGAGTTTGGGAACACGATCACCGAAAACATGGAATGCCGTAGTTTg                                                                                                                                                             >  2:30193/1‑239 (MQ=255)
                                                                                     aaaTATGCCGGTCAGGACAAAGTAACTCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGCCTTAATTGTTAAAGGTATGGAAGGGGCA‑ATCAACGCGAAAACCGTGACCCTTGCCTTTCAGGGTCG‑G‑ATGGATGGCGCTAAACGGCTGGAAGGTCCAGAGATTGGTGACGCGTTCATCGGAAAACTGAAATGCCGTAATTTTGTaaa                                                                                                                                                        >  1:532481/1‑239 (MQ=255)
                                                                                     aaaTATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTaaa                                                                                                                                                        >  2:1225614/1‑239 (MQ=255)
                                                                                     aaaTATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGAGTCT‑G‑ATGGATGGCGCTAAAATGCTGAAAAGTTCAGAGTTTGGGGACCCGGACATCTAAAAAATGAAAAGCCGGTG‑TTGTTaaaa                                                                                                                                                       >  1:890600/1‑238 (MQ=25)
                                                                                          tGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGTCGCA‑ATCAACGCGAAAACCGTAACCTTTGACTTCGAGCTTCG‑G‑TGGGATAGCGCTAAACTGCTGAAATTTTCTGAGTTTGGTGACCCGGTCATCGAAAACAAGAAATCCCGAATTTTGGTAAATttat                                                                                                                                                   >  1:315247/1‑239 (MQ=255)
                                                                                               gTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGAATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGCAATGTTCAGTGTTTGGTGACGCGATCATCGAAACAATGTAATGCCGAAGTTTGTTAAATTTATTaaag                                                                                                                                              >  2:1167583/1‑237 (MQ=255)
                                                                                                gtagggaaaggTAAATCCTTGTTTTTATTTTCTCGCCGCTGAGATGTTGCGGCCGCACATGGGTTGGACCGGAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAACCCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACgg                                                                                                                                             <  1:65404/229‑1 (MQ=255)
                                                                                                         aGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTaa                                                                                                                                     >  2:700810/1‑238 (MQ=255)
                                                                                                              aTCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGCAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAActttc                                                                                                                                >  2:969164/1‑234 (MQ=255)
                                                                                                              aTCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑Tc                                                                                                                               >  2:635310/1‑238 (MQ=255)
                                                                                                                        tattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGcc                                                                                                                                                                     <  2:148612/191‑1 (MQ=255)
                                                                                                                           tattCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGt                                                                                                                 <  2:890600/239‑1 (MQ=255)
                                                                                                                              tctctcCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAg                                                                                                              <  2:315247/239‑1 (MQ=255)
                                                                                                                               ctctcCGCTGAGATGATGCTGCGCCACATGGGTTGGATCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTACTGCCGTAGTTTGTTAAATTTATTAACGGGGGCGTAACGC‑TCCCGATGTTTTTTGTTAg                                                                                                              >  2:375442/1‑238 (MQ=255)
                                                                                                                                 ctgtgCTGAGGTGAGGCTGGGCCACATGGGTTGGACCGAGGGGGGTGAGTTAATGGTTAAAGGTATGGAAGGGGCA‑ACAACCGCGAAAGCCGTAACCTATGACTGCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGgct                                                                                                           <  1:236692/235‑1 (MQ=255)
                                                                                                                                  tcCGCTGAGATGATGCTGCGCCACATGGGTTGGAGCGAAGCGGCTGACTTAATTGTTAAAGGGATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTTTCT‑A‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTAACGCGTTCATCGAAACAATGTAATGACGTAGTTAGTTAAATTTATTAATGGGAGGGGAACGC‑GCCGGTTGTTTTTTGTTAggggg                                                                                                          >  1:961900/1‑236 (MQ=255)
                                                                                                                                  tcCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTACCGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAg                                                                                                              >  2:174803/1‑235 (MQ=255)
                                                                                                                                  tcCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGAATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGGGTCT‑G‑AGGGATGGCGCTAAACTGCTGACATGTTCGGAGTTTGGGGACGCGCTCATCGAAAACCTGTAATGCCGATGTATGTTAGTTTATTTAACGGATACGAAACGC‑TCACGGTGTTTTTGTTTAGactg                                                                                                          >  1:345345/1‑239 (MQ=255)
                                                                                                                                    cGCTGAGATGATGCTGCGCCACATGGGTTGGACCGCAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGTGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGCAATGTTAAGAGTTTTGTTGCGTGATCTTCGCAAACATGTAATGCCGTAGTTGGTTAAATTTATTAACGGGAGGGATACGA‑CCCCGTGGTTTTTTTTTAGgttgcg                                                                                                        >  1:650510/1‑238 (MQ=255)
                                                                                                                                    cGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTTTTAACGGGGGCGAAACGC‑TCCCGTTTTTTTTTTTTAGgctttt                                                                                                        >  1:1266435/1‑236 (MQ=255)
                                                                                                                                    cGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGAGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGCTCATCGCAACAGTGTAATGCCGTAGGATGTTAAATTTATTAACGGAAGCGTAACGT‑GTCCGTTATTTTTTGTTatgttcgt                                                                                                        >  1:172923/1‑232 (MQ=255)
                                                                                                                                         gaaagatgGTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACgg                                                                                                   <  2:601428/235‑1 (MQ=255)
                                                                                                                                           atgatgCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGGTCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGTGCGGAACGC‑TCCCGTTGTTTTTTGTTAGTCTGGTAAggggt                                                                                                 >  1:882310/1‑237 (MQ=255)
                                                                                                                                              atgCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATc                                                                                              >  2:633414/1‑239 (MQ=255)
                                                                                                                                                gctgcGCCACATGGGTTGGACCGAAGCGGCTAACTTAATTGTTAAAGGTAGGGAAGGCGCA‑ATCAACGCGAAATCCGTAACCTATGACTTAGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCa                                                                                             <  2:866389/238‑1 (MQ=255)
                                                                                                                                                   gcgcCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCTTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGGAATGTTAAGAGTTTGGTCACGCGATCATAGAAACCATGGAATGCCGTAGTTTGTTGACTTTATTACCGGGGGAGTACACC‑GCCAGCTGTATTTTGTAAGGCTGCAACAGATGATCAAAAt                                                                                         >  1:426928/1‑239 (MQ=18)
                                                                                                                                                    cgcCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAAtt                                                                                        >  2:682615/1‑239 (MQ=255)
                                                                                                                                                    cgcCACATGAGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAAACGTTGAAATTTTCATAGTTTGGTGCCGCGCTCATCGAAAACATGTAATGCCGTAGGTGTTTTAGTTTATTACCGGGAGCATAAGGCTTCCCGTGGTTTTTT‑TTAGGCTGTTAACGGTTATCaaaaat                                                                                        >  1:360787/1‑237 (MQ=255)
                                                                                                                                                              gTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCgt                                                                                                                           <  2:32920/194‑1 (MQ=255)
                                                                                                                                                               ttGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCaaaaa                                                                              <  2:344770/238‑1 (MQ=255)
                                                                                                                                                                tGGACCGAAGCGGCTGACTTAATTGTTAAAGGTAGGGAAGGGCCA‑ATCAACTCGAAAACCGGAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCaaaaaaa                                                                            <  2:1243574/239‑1 (MQ=255)
                                                                                                                                                                   aCCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCAAGCGTCG‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGAGCCGATCATCGAAAACATGAAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGGAACGT‑ACCCTGTGTTTTTTGTTTGGTTGTTACAGGATTTCAAAATTTTTTAAAAAAAAGtt                                                                         >  1:1072734/1‑239 (MQ=21)
                                                                                                                                                                   aCCAAAGCGGCTTACTTAATTGTTAAAGGTAAGGAAGGCGAA‑ATCAACGCGAAATCCTTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCGGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TACCGTTGTGTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGt                                                                          <  1:969164/238‑1 (MQ=255)
                                                                                                                                                                        aacGGCTGAATTAATTGTTAAAGGTATGGGAGGCTCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCaa                                                                    <  2:1072734/237‑1 (MQ=255)
                                                                                                                                                                           gggtGACTTAATTGTACAAGGTAAGGAAGGCGAA‑ATCAACGCAAAAACCGGAACCTATGACTGCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCAGCGAAAACATGTAATGCCGTAGTTTGTTAAAGTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCaaaa                                                                  <  2:1283599/235‑1 (MQ=255)
                                                                                                                                                                           ggCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCaaaa                                                                  <  2:333971/238‑1 (MQ=255)
                                                                                                                                                                            gCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAg                                                                                                              <  2:1040618/193‑1 (MQ=255)
                                                                                                                                                                            gCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTGGTTTTTTGTTAg                                                                                                              >  1:1040618/1‑193 (MQ=255)
                                                                                                                                                                                  tttaTTTTTAAAGGTTGGGAAGGCCGA‑ATCAACGGGAAAACCGTAACCTGTGACTTCGAGGGTGT‑G‑ATGGATTGGGCGAAACTGCTGAAATGTTAAGATGTTGGTTGCGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTGTTTGTTAGGCTGCTAACGGTTATCAAAATTTTTTCAAAAAAAGTTATCAAAACCCCTCgg                                                          <  1:920146/236‑1 (MQ=255)
                                                                                                                                                                                  ttAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACTGGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCgg                                                          <  2:364539/239‑1 (MQ=255)
                                                                                                                                                                                  ttAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGTCTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCgg                                                          <  2:172923/239‑1 (MQ=255)
                                                                                                                                                                                   tAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGt                                                         <  2:612898/239‑1 (MQ=255)
                                                                                                                                                                                   tAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGt                                                         <  2:62282/239‑1 (MQ=255)
                                                                                                                                                                                       ttttAACGGTTTGGAAGGCGCA‑ATTAACGCGAAAACCGTAACCTATGTCTTCG‑GGTTGT‑GTATGGATGGCGCTAAACTGGCGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAACCAGGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGtt                                                     <  1:1225614/237‑1 (MQ=255)
                                                                                                                                                                                          tAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTTTCAAAACCCCTCGGAAGTTTTg                                                  >  2:527900/1‑239 (MQ=255)
                                                                                                                                                                                          tAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTg                                                  >  2:214887/1‑239 (MQ=255)
                                                                                                                                                                                            aaGGTTGGGAAGGCGAA‑AAAAACGCGAAAACCGTAACCTATGTCTTCGAGGGTCT‑A‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTGGGTGACGCGATCATCGAAAACAGTTAATGCCGTATTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCGGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAACCCCCTCGGTAGTTTTggg                                                <  1:374450/239‑1 (MQ=255)
                                                                                                                                                                                                  tGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCgttgtt                                                                                                                       >  2:1088418/1‑162 (MQ=255)
                                                                                                                                                                                                  tGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCgttgtt                                                                                                                       <  1:1088418/162‑1 (MQ=255)
                                                                                                                                                                                                   ggAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTGGTTTTGGGGTAggtg                                         >  2:1250828/1‑237 (MQ=255)
                                                                                                                                                                                                   ggAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACTCGATCTTCGAAAACATGTAATGCCGTAGTTTGTTAAATTTCTTAACGGTAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTTTCACCATTTTATCAAAAAAGTTTTTCAAACCCCCTCGGGCTTTTTTGGGTAg                                            >  1:102665/1‑236 (MQ=255)
                                                                                                                                                                                                   ggAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAg                                            >  2:546023/1‑236 (MQ=255)
                                                                                                                                                                                                        gcgcA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAg                                                                                                              >  2:1053058/1‑165 (MQ=255)
                                                                                                                                                                                                        gcgcA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAg                                                                                                              <  1:1053058/165‑1 (MQ=255)
                                                                                                                                                                                                         cgcA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACCGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGATTGTTATATTTATTAACGGGGGCGGACACC‑TCCCGTTGCTTTTTTTTCGGCTGTTAACGGTTACCAAAATTTTCTCAACAAAATTTATCAAAACCCCTCGGGCTGTTTGGGGTAGGCAGGCCgg                                   >  1:311913/1‑239 (MQ=255)
                                                                                                                                                                                                         cgcA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGTCTGCTAACGGTTATCAAAATTTTATCCAAAAAAGTTATCAAAACCCCTCGGTACTTTTGGGGTAGGCTGGCCgt                                   >  2:943906/1‑238 (MQ=255)
                                                                                                                                                                                                          gcA‑ATCAACGCGAAAACCGTAACCTTTTTCTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGt                                  <  1:546023/239‑1 (MQ=255)
                                                                                                                                                                                                          ccA‑ATCAACGCAAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAAGGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCgg                                   <  2:686108/237‑1 (MQ=255)
                                                                                                                                                                                                           cA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGt                                  <  2:649206/238‑1 (MQ=255)
                                                                                                                                                                                                            a‑aTCACCGCGAAAACCGTAACCTATGACTTCG‑GGGTGTGG‑ATGGATGGCGCTAAACTGGTGAAAGGTTCAGAGTTGGGGTAAGCGATCATGGAAAACATGTAATGCCGGAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCa                                <  1:633414/239‑1 (MQ=255)
                                                                                                                                                                                                                   cgcgAAAACCGTAACCTATGACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGACATGTTCAGAGATATGTGACGCGCTCATCGAAAACATGTAATGCCGTAGTTTGTTGAATTTATTAAAGTGCGCGTAAAGC‑TACCGTTGCTGTTTGATAGACTGCAAACGGGTATCAAAATTTTTTCAAACAAAGTGCGCAGAACCCAACGGGCATTTTGGGGTAGGCTgacaggaaaggagag                          >  1:340087/1‑225 (MQ=255)
                                                                                                                                                                                                                      caaaaCCGTACTGTATGTCTTCGGGCTGCT‑G‑GTGGGGTGCGTAAAACTGCATAAATGTTCATGGTTTGGTCACGGGATCATCGAAAACATGTAATGCCTGAGTTTGTTAAATGTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTATGCTGCGAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAATCCCCTCGTTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGt                       <  1:1167583/238‑1 (MQ=255)
                                                                                                                                                                                                                        aaaCCTTAACCTATGACCTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTc                     <  2:426928/239‑1 (MQ=255)
                                                                                                                                                                                                                        aaaCCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGtt                      <  2:882310/238‑1 (MQ=255)
                                                                                                                                                                                                                                  cTATGGCTTCGGACGGTT‑G‑ATGGATGGCGCTAAACTGGTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGt           <  2:579360/239‑1 (MQ=255)
                                                                                                                                                                                                                                   tATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGtc          <  2:1266435/239‑1 (MQ=255)
                                                                                                                                                                                                                                    atggattCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGAGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTCAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGtct         <  2:340087/234‑1 (MQ=255)
                                                                                                                                                                                                                                     tGACTTCGAGTGTCT‑G‑ATGGATGACGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAACACATGTAATGCCGAAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCAGTTGTTTTTTGTTAGGCTGCTAACAGCGATCAAAATTTAATCAAAAAAAGTTATCAAAACCCCTCGGCAGTTTTGGGGTAGGCTGGCCGTTCAGGTGGAAggctgactactaaaat         >  1:209682/1‑223 (MQ=255)
                                                                                                                                                                                                                                      gACTTCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAACCATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCATAAAAAGTTATTAAAACCCCTCGGTATTTTTGGGGTGAGCTGGCCGGTCAGGTGGAAGTTCAACTACCAGTCTcc       >  1:994785/1‑239 (MQ=255)
                                                                                                                                                                                                                                         ttCGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGTCTCCcac    <  2:532481/239‑1 (MQ=255)
                                                                                                                                                                                                                                         ttCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATTTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGTCTCCca     <  2:1110262/238‑1 (MQ=255)
                                                                                                                                                                                                                                           cGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGGGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGTCTcc       <  1:1079723/234‑1 (MQ=255)
                                                                                                                                                                                                                                           cGAGTGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGTCTcc       >  2:1079723/1‑234 (MQ=255)
                                                                                                                                                                                                                                           cGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAATTAAATTATCAACACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTTTACTATTAGTCTCCCACAt  >  2:1289230/1‑239 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
GCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCA‑ATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCT‑G‑ATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGC‑TCCCGTTGTTTTTTGTTAGGCTGCTAACGGTTATCAAAATTTTATCAAAAAAAGTTATCAAAACCCCTCGGTAGTTTTGGGGTAGGCTGGCCGGTCAGGTGGTAGTTCTACTACTAGTCTCCCACAT  >  NC_000913/1196067‑1196539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A