Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F32 I40 R1
|
13 |
46.7 |
1511635 |
98.1% |
1482913 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
2,718,735 |
G→T |
P124Q (CCG→CAG) |
kgtP ← |
alpha‑ketoglutarate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,718,735 | 0 | G | T | 100.0%
| 164.2
/ NA
| 55 | P124Q (CCG→CAG) | kgtP | alpha‑ketoglutarate transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (22/33); total (22/33) |
GTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCAACCGCCTATTGGGC > CP009273/2718589‑2718879
|
tcccgccgGTCAACGTCACATACTGAAATGACGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAACGCCTGa < 1:76273/147‑1 (MQ=255)
tCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAg < 1:86114/149‑1 (MQ=255)
cccgccgATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAg < 1:86229/148‑1 (MQ=255)
gTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCACCTTAACACATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGCGACGCAATCATGCCTGAGCCCCCGTACCaat > 1:155534/1‑149 (MQ=255)
gTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGt > 2:169374/1‑143 (MQ=255)
acaTACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGt < 1:179648/149‑1 (MQ=255)
aTACTGAAATGATGCGTAAAACCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGttt < 1:614007/149‑1 (MQ=255)
aTACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATTGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCta < 2:354024/143‑1 (MQ=255)
aaaTGATGCGTAAAAAGCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGAGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGttt > 2:499600/1‑143 (MQ=255)
atgatgCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCt < 1:102280/149‑1 (MQ=255)
gCGTAAAAACCTTTGCGCCCTTCTACGGCAACCTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAAcc < 2:445778/143‑1 (MQ=255)
aaaaaCCTTGGCGCCCTTCAACGGCAACTTCACTCATATAGCTGTCGCGGGTGCCAGATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAAAGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGaggcag < 1:611397/149‑1 (MQ=255)
aaaaCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGa > 2:532419/1‑143 (MQ=255)
aaCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGACAATCCCTCAAAGAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGagg < 2:40037/143‑1 (MQ=255)
ttGCGCCCTTCAACGGCAACTTCTCTCATATAGGTGGGGCTGGTGCCATATTCTCCGCCAACAGTTAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGaggcaggc < 2:262444/143‑1 (MQ=255)
gcgcCCTTCAACGGCAACTTCACTCAGATAGGTGGCGCTGGGGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCa < 1:367237/149‑1 (MQ=255)
gcCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGc > 1:55771/1‑149 (MQ=255)
ttCAACGGCAACTTCACTCATATAGGTGGCTCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATc > 1:387701/1‑149 (MQ=255)
gtCAACGGCAACTTCAGTCATATAGGTGGCGCGGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGAGAGAAGCAGTAATGCCTGAGCCCACGTACCTATAGTGTCATAACCTGGGAGGCAGGGGGTAACCa > 2:167066/2‑143 (MQ=255)
tCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATcc < 1:642580/149‑1 (MQ=255)
ctcttccgatctCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGc < 2:605024/132‑1 (MQ=255)
cGGCAAGTTCACTCATATAGGTGGGGCTGGCGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGaaa < 1:75784/149‑1 (MQ=255)
cGGCAACTTCACTCATATAGGTGGCGCTGGTGCCTTATTCTCCGCCAACAGATAATCCCTGAGATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGaaa < 1:536782/149‑1 (MQ=255)
ggCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATc < 2:450303/143‑1 (MQ=255)
ggCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAac > 1:405549/1‑149 (MQ=255)
gCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGACAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAcca > 1:542870/1‑149 (MQ=255)
cAACTCCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAacac < 1:142989/149‑1 (MQ=255)
aCTTCACTCATATAGGTGGGGTTGGGTCCAGATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACAcat < 1:671721/149‑1 (MQ=255)
cTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAAGGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGaaa < 2:244347/143‑1 (MQ=255)
ttCACTCATATAGGCGGCGCTGGTGCCTGATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAac < 2:368117/143‑1 (MQ=255)
gaCTCATATGGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCGGAAATAAACGGGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATa < 1:641632/148‑1 (MQ=255)
aCTCATATAGGTGGCCCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGCGAGGCGGGCGCTAACCCGCGCTCCGAAAcaca > 2:432293/1‑143 (MQ=255)
cATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACAcatca < 2:472591/143‑1 (MQ=255)
atatAGGCGGCGCTGGCGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCCATAGTTTCATAACCTGGGAGGCAGGCGATAACTAGCGATCCGAAACACATCATacacac < 1:216653/149‑1 (MQ=255)
taGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATaca < 2:209593/143‑1 (MQ=255)
gTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGCGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATaa > 1:161932/1‑149 (MQ=255)
gcgcTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGa < 2:438162/143‑1 (MQ=255)
tGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGCAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATGAc > 2:606001/1‑143 (MQ=255)
tGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATGGAt > 1:319949/1‑149 (MQ=255)
cATATTCTCCGCCAACAGATAATGCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGAGAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATc > 2:483662/1‑143 (MQ=255)
atTCTCCGCCAACAGATAATCCCTGAAATACCCGAGCGAGAAGTCATCATGCCTGAGCCCACGTACCTATAGTTTCACAACCTTGAAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTg < 1:69174/149‑1 (MQ=255)
tcCGCCAACAGATAATCCCTGAAATAAACGAGCGGGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACAAATCATACAACCCGATAACAGCATCGAttgtt > 2:284013/1‑143 (MQ=255)
gCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGc > 2:96961/1‑143 (MQ=255)
ccAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGCTAACCAGCGACCCCAAACACATCATCCACACCGATAACAGCACCGATTTTTTGCg > 2:74646/1‑143 (MQ=255)
cAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGCTTTTTTGCGACCATGTTTa > 1:718121/1‑149 (MQ=255)
cccTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTAt < 1:145012/149‑1 (MQ=255)
ccTGAAATAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATg > 1:274723/1‑149 (MQ=255)
gAAATAAACGAGCGCGAAGCAATAATGCCTGAGCCCTCGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGCCCATGTTTATCGGCTATGCgg < 1:560167/149‑1 (MQ=255)
aTAAACGAGCGAGAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACCCACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCa < 1:156706/149‑1 (MQ=255)
cgagcgagAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAg < 1:578320/149‑1 (MQ=255)
cgagcgagAAGCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAg < 1:547372/149‑1 (MQ=255)
agcgagAAGCAATCATGCCTGGGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCaa < 2:618583/143‑1 (MQ=255)
gCAATAATGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCaa > 2:289858/1‑143 (MQ=255)
aataatGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACGGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAACTACCCAAGCggccat > 1:458553/1‑144 (MQ=255)
tGCCTGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATATATTGAGAACATGTTTATCGGCTATGCGGCCAAATAGCCCACCGACTATTGAgc > 1:696942/1‑149 (MQ=255)
|
GTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCAACCGCCTATTGGGC > CP009273/2718589‑2718879
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
