Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F178 I0 R1
|
39 |
50.1 |
1100758 |
94.0% |
1034712 |
140.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
CP000730 |
1,747,382 |
(TAC)3→2 |
100% |
coding (2065‑2067/2280 nt) |
secDF ← |
RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP000730 |
1747374 |
1747376 |
3 |
37 [0] |
[1] 38 |
secDF |
RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP000730 |
1747377 = | 0 (0.000) | 37 (0.860) |
30/242 |
NT |
100% |
coding (2072/2280 nt) |
secDF |
RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 |
= 1747373 |
0 (0.000) | coding (2076/2280 nt) |
secDF |
RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
GATK/CNVnator alignment
N/A
